PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021300119.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22672.4 Da    PI: 8.6566
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021300119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.65.3e-26958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    kri+n   rqvtf+kRr+g+lKKA+ELSvLCdae+ v+ifs +gklye +
  XP_021300119.1  9 KRIDNPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVVIFSAHGKLYELA 58
                    79*********************************************965 PP
2K-box61.43.6e-218517213100
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +  + ++e++ Lk+eie Lq+ +R + G + e ++l eL  Le++Le  + +iRs+K+++++++i+ l++ke  l+ +nk+L+ k+ee
  XP_021300119.1  85 EPMEAKKEIDMLKQEIEILQKGLRYMFGGGSEIMTLDELFVLEKHLEIWIYHIRSTKMDIMFQEIQMLRNKEGILNAANKYLQDKIEE 172
                     5567899******************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MARGRVQMKR IDNPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVVIFSA HGKLYELATK  60
GTMQGLIERY TNYNGRTQPV EAVAEPMEAK KEIDMLKQEI EILQKGLRYM FGGGSEIMTL  120
DELFVLEKHL EIWIYHIRST KMDIMFQEIQ MLRNKEGILN AANKYLQDKI EENISNTDFT  180
TINTNMPHPL TIANNIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-78MIKC_MADS family protein