PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021300299.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24428.2 Da    PI: 10.1927
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021300299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.4e-221763349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    i  k   qvtfskRr+g++KKA+EL++LC+++va+i+fs+  k+y +
  XP_021300299.1 17 IAKKNHLQVTFSKRRTGLFKKASELCTLCGVDVAMIVFSPGKKVYSF 63
                    6677888**************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MTKNSNMGRQ RITMAKIAKK NHLQVTFSKR RTGLFKKASE LCTLCGVDVA MIVFSPGKKV  60
YSFGHPRVES IVDRFLTQNP PLRSSTAHQL VEAHRNASIH ELNIRLTQLL EQLEIENRRG  120
DALDNIRKAG LNLCWWQAPI DELGLNELER LRIALEELKK NVAKQAKKVL LESADHKRWQ  180
FLAVNGIGHA NPFENKDNGI CRIIDQAYGY GDGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-50M-type_MADS family protein