PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300301.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

M-type_MADS

Protein Properties

Length: 218aa MW: 24280.2 Da PI: 5.2589

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.4	4e-23	15	58	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++s rqvtfskRrng++KKA+EL+vLC+a++ +i+fs++gk XP_021300301.1 15 KLEDESSRQVTFSKRRNGLFKKASELCVLCGANIGIIVFSPRGK 58 6799***************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MAKATRGRQK IQIKKLEDES SRQVTFSKRR NGLFKKASEL CVLCGANIGI IVFSPRGKPF 60 CFGHPNVDAV VDRYLSGNPT LHGEEDSETS CDGTPCFEEL DEECKEAMEK LEEEKRRSKE 120 IEKEKEERKK KGQFWWDEPI DNMGVEELEA YVKAMEELRK NVARRANELM GDVLAAATVA 180 NSGGLGTGFA DQNGGFGYGY DGFHFGHGHG LDFGGGQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	131	KRRSKEIEKEKEERKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	9e-38	M-type_MADS family protein