PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021300302.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28662 Da    PI: 9.5716
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021300302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.19.7e-231863449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +n+sn qvtfskRr+g++KKA+EL++LC+ae+a+i+fs+  k++ +
  XP_021300302.1 18 KNDSNLQVTFSKRRAGLFKKASELCTLCGAEIAIIVFSPGRKVFSF 63
                    8**************************************9999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MTKKQSKGRQ RVEMVKMKND SNLQVTFSKR RAGLFKKASE LCTLCGAEIA IIVFSPGRKV  60
FSFGHPEVEA VMDRYLNMPD PPQTSGTMQL IEAHRNANIR ELNMQLTQVA NRLEAAKKRG  120
EELNEMRKAI QSHCWWASPF EELSLPQLQK LKTVMEELKK NVASQGNHLL MQRMNTQQFL  180
MGSSSSGEIP YEPKDNIVFD ANMMPAGYSA PNMMPEGFSA PNMMPPPPGF NPHPEGYNYL  240
NPLGYNPGFG RGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-67M-type_MADS family protein