PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300345.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 247aa MW: 28982.4 Da PI: 4.6254

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.7	8.5e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+ ++ ++G +W+ +++ g+ R++k+c++rw +yl XP_021300345.1 15 KGTWSPEEDQKLITYIMRHGIWNWNEMPKYAGLSRSGKSCRLRWMNYL 62 799***************99**********************97 PP
2	Myb_DNA-binding	49.7	8.6e-16	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+e +v++ k+ G++ W++Ia++++ Rt++++k++w++ XP_021300345.1 68 RGNFTREEEEAIVHLQKMIGNR-WSAIAAMLP-QRTDNDIKNYWNT 111 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MVRQPISWSR TLLKKGTWSP EEDQKLITYI MRHGIWNWNE MPKYAGLSRS GKSCRLRWMN 60 YLRPNIKRGN FTREEEEAIV HLQKMIGNRW SAIAAMLPQR TDNDIKNYWN TRLKRRVENN 120 LTSATTSPTG NNSCMEIEQK NSFDADSSFL NTLLELDSAI PTLEDFPQPA TYEFYPSENT 180 YTEDNFVSSQ ESWEIQSLLE QPLTVEAFDS EDCQAMPPNS QPWLHEPIYL YESYSNPVDD 240 FWVNPFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	7e-52	MYB family protein