PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300346.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 238aa MW: 27539.7 Da PI: 4.6082

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.5e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+ ++ ++G +W+ +++ g+ R +k+c++rw +yl XP_021300346.1 15 KGTWSPEEDQKLIAYIMRYGIWNWNEMPKYAGLSRPGKSCRLRWMNYL 62 799***************99**********************97 PP
2	Myb_DNA-binding	39.1	1.8e-12	68	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+ E e + ++ k+lG++ W++Ia++++ Rt++++k++w++ XP_021300346.1 68 RGNFTKAEGETIFHLQKMLGNR-WSAIAAMLQ--RTDNDIKNYWNT 110 89******************.****9..********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MVRQPTSWNR TFLMKGTWSP EEDQKLIAYI MRYGIWNWNE MPKYAGLSRP GKSCRLRWMN 60 YLRPYIKRGN FTKAEGETIF HLQKMLGNRW SAIAAMLQRT DNDIKNYWNT RLKKRVENNL 120 ASATASPTAN NSGIEPEQEN SSDADSSSLN TLVELDSALK DFPEPAAYEI SPSENAYTVE 180 DNFVSSQESW EIQSLLEQPL TEVAFDSEDC QVLSPNSQLW LHESFYNPED DFRVNPFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	1e-44	MYB family protein