PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021300354.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 211aa    MW: 24506.1 Da    PI: 9.8545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021300354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.4e-13100189485
                     E-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   4 vltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     +lt  d   +  rl+l k+++ e         + + ++++ ++ +d++g+++ +k+ ++ ++  ++ t+GWk+F k++ Lke D+v+  + 
  XP_021300354.1 100 QLTETDLKDNqTRLSLNKNHVGESfipllkehE-DVNKGIPVITYDPEGKEYPMKFVFWTSKMYVLTTSGWKRFYKDHALKESDIVTVWMF 189
                     555555544446788888888777788877743.3457888********************9888999*****************985433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MKKDHRDNKS KSIEEILNEG FLNENDVNAA FILASFRNGA PDLEQKRREV LRRLKGKVKQ  60
DTAAKRGQLI LLDKCEPPNI PPVATLADLI GECSKPYSKQ LTETDLKDNQ TRLSLNKNHV  120
GESFIPLLKE HEDVNKGIPV ITYDPEGKEY PMKFVFWTSK MYVLTTSGWK RFYKDHALKE  180
SDIVTVWMFR HRHTHNLCFA ITWRRSPTKS H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-26B3 family protein