PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021300571.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 164aa    MW: 18729.3 Da    PI: 7.324
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021300571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-2377164182
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                     f k+ltpsd++++g +++pk++a++       +++++ +++l++ d++g +W++++i+r++++r++lt+GW+ Fv +++L +gD+++F
  XP_021300571.1  77 FSKKLTPSDTNTHGGFSVPKRHANDGclppldMSQHTPQQELVVIDLHGSEWRFRHIFRGQPKRHLLTSGWSTFVTSKKLVAGDTFIF 164
                     88*********************777*****9666666679*********************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MEQVEAYVNK DGTMEMPIYN LPSKILCRVL HVQLKAETGT DEVFAQITLL PEAEQDELSM  60
EHRNYQALPR VAHSRFFSKK LTPSDTNTHG GFSVPKRHAN DGCLPPLDMS QHTPQQELVV  120
IDLHGSEWRF RHIFRGQPKR HLLTSGWSTF VTSKKLVAGD TFIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.33e-68ARF family protein