PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300688.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 247aa MW: 28145.1 Da PI: 9.0496

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.8e-17	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEdell+ +++ +G g+W++ ++ g+ R++k+c++rw +yl XP_021300688.1 35 KGAWTREEDELLIAYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 82 79****************************99**********97 PP
2	Myb_DNA-binding	59.8	6.1e-19	88	132	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++ +lG++ W+ Ia++++ gRt++++k++w+++ XP_021300688.1 88 RGNFTDEEDELIIKLHSLLGNK-WSIIAARLP-GRTDNEIKNHWNTH 132 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MYEGHCQNQR QSLVLQSRKR KMGRSPCCEK GHMNKGAWTR EEDELLIAYI QAHGEGCWRS 60 LPKAAGLLRC GKSCRLRWIN YLRPDLKRGN FTDEEDELII KLHSLLGNKW SIIAARLPGR 120 TDNEIKNHWN THIKRKLLSR GIDPLTHRPI NEQAATHSTD RGSSAAVLRQ DAKTDIEFPY 180 LNHNNPDGEK YPELNLELRI SPPSSHPPRK EETTDRKIIC FCSSLGLQNS KGCTCGAVGI 240 EHLRFCA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	22	SRKRKM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-94	MYB family protein