PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021301128.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 233aa MW: 27041.8 Da PI: 9.5124

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021301128.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84	9.3e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgklye++s XP_021301128.1 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLMIFSSTGKLYEFAS 59 8***********************************************86 PP
2	K-box	79.5	8.4e-27	82	170	10	98
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + + + +q+e+a L+++++nLq+++R+l+Ge+L+ Ls+++Lq+Le+qLe sl+ +R kK+++l+++i+el ++ + +++en +L kk+ XP_021301128.1 82 PSLEVKFWQREAAILRQQLQNLQENHRQLMGEQLHGLSVEDLQNLENQLEMSLRGVRMKKERILTDEIQELSQRGNVIHQENVELYKKV 170 4567899*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLMIFSS TGKLYEFAST 60 SMKSVIERYN SLREEQQQLL NPSLEVKFWQ REAAILRQQL QNLQENHRQL MGEQLHGLSV 120 EDLQNLENQL EMSLRGVRMK KERILTDEIQ ELSQRGNVIH QENVELYKKV NLMRKENMEL 180 YKKVYGTRDV NTSDGNALTS YCFDSGEGSH VPVHLRLSQP EPQNYDTPNR SKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-111	MIKC_MADS family protein