PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021301241.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 245aa MW: 27556.8 Da PI: 9.2775

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021301241.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.4	4.4e-20	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v ++G+++W++I++ ++ gR++k+c++rw + XP_021301241.1 9 KGPWSPEEDELLRKLVLRHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 54 79****************************.*********985 PP
2	Myb_DNA-binding	56.9	4.6e-18	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde + +a++++G++ W+tIar ++ gRt++ +k++w++ XP_021301241.1 63 AFTQEEDETIMRAHARYGNK-WATIARLLN-GRTDNAVKNHWNST 105 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MDQDFDRVKG PWSPEEDELL RKLVLRHGPR NWSLISKSIP GRSGKSCRLR WCNQLSPEVE 60 HRAFTQEEDE TIMRAHARYG NKWATIARLL NGRTDNAVKN HWNSTLKRKL SMEDGDSLQE 120 TGKRSAKSQR SESSNNMGSP SGSDVSDLGL NVAESKRSGV STELTLGRSS NESSELNNDN 180 SSSEKVLLAQ KHEMGTKTAT VDQNLMAAMQ EMIRKEVRDC MAEFGFQSEG VRNAGFKRIG 240 IRRID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-73	MYB family protein