PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021635064.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 856aa MW: 95185.4 Da PI: 4.8506

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021635064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.3e-08	285	304	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ff++ G+C +G++C+F H XP_021635064.1 285 ICDFFSK-GWCIRGSSCTFLH 304 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence
MPPPISAAQG SDDDQSPSSS GPPVEISDSD LEKDDQETEI EVEEEEIEND NEEEEYEEII 60 VVEEEEIEEE VEVEEDDMSD SSKEANAKSN DVSQDTEFEG TDRQLGLRST PGRSSLGLPS 120 NSLVEDGVCN SQFSGPLNEP VKLQEELHVN YEDSKKSGTN GENGSQRSLV KNDTEALMIK 180 KKSKEISKHY SDSMAHFFND EAMAAETTSP SSITVNEVTN ALAIKDSLGM ETNGILDSEV 240 DVNPMEKRSE DKEQTTSRLV TLEKRTRSLS PSAEFEDQNK RPAVICDFFS KGWCIRGSSC 300 TFLHIKNKTV NAKEQLEGDA AAANFSKRDQ FDEGLKNITE KQKFPGFPDL MAPSIGNSAA 360 FSCQFSSERI LALENGESQR LHQLDDKHKS LSLQREDLSQ GFHSDTQQFP SSKDDHGVSS 420 SLKNVGIDNL RRSWPASDYG SYASPINRGS SPSFQSRLLP ELRYSSSFSS VTSSNNHREN 480 SFSYLSSLDN LTYIRDQFVQ GTSLDGSLSS SVMLPSQQIS AWKGPLFSFS SSLNTSPFGS 540 QKLSDNDRNY HASRSLRQSA SLLFGSERET SLLTSVSRGP LHYAEHKAKI SSNDWEPSIP 600 FRPSFSITYT VASSPGSQYD PLRDSIDLST TGYRLPFKFS FVSQERSNLN SSHQPIYDNS 660 LSKTLGSECH NDKSTVSLHG RFHENVLDKN CYTPGKVMGG TCVVSGQKGT MPKEENASSS 720 GHLSDVPNTS KIDVDCDSRH EYDAPRHKQD FKVDRVRQKN EMDVDQKTDG ESRVLRHFRA 780 ALIDFVKELL RPTWREGHLS KDAHNTIAKK AVEKVLRTLQ PHQIPTTVES TRQYLSSSQP 840 KIAKLVEGYC TKYGKS

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence

MPPPISAAQG SDDDQSPSSS GPPVEISDSD LEKDDQETEI EVEEEEIEND NEEEEYEEII  60
VVEEEEIEEE VEVEEDDMSD SSKEANAKSN DVSQDTEFEG TDRQLGLRST PGRSSLGLPS  120
NSLVEDGVCN SQFSGPLNEP VKLQEELHVN YEDSKKSGTN GENGSQRSLV KNDTEALMIK  180
KKSKEISKHY SDSMAHFFND EAMAAETTSP SSITVNEVTN ALAIKDSLGM ETNGILDSEV  240
DVNPMEKRSE DKEQTTSRLV TLEKRTRSLS PSAEFEDQNK RPAVICDFFS KGWCIRGSSC  300
TFLHIKNKTV NAKEQLEGDA AAANFSKRDQ FDEGLKNITE KQKFPGFPDL MAPSIGNSAA  360
FSCQFSSERI LALENGESQR LHQLDDKHKS LSLQREDLSQ GFHSDTQQFP SSKDDHGVSS  420
SLKNVGIDNL RRSWPASDYG SYASPINRGS SPSFQSRLLP ELRYSSSFSS VTSSNNHREN  480
SFSYLSSLDN LTYIRDQFVQ GTSLDGSLSS SVMLPSQQIS AWKGPLFSFS SSLNTSPFGS  540
QKLSDNDRNY HASRSLRQSA SLLFGSERET SLLTSVSRGP LHYAEHKAKI SSNDWEPSIP  600
FRPSFSITYT VASSPGSQYD PLRDSIDLST TGYRLPFKFS FVSQERSNLN SSHQPIYDNS  660
LSKTLGSECH NDKSTVSLHG RFHENVLDKN CYTPGKVMGG TCVVSGQKGT MPKEENASSS  720
GHLSDVPNTS KIDVDCDSRH EYDAPRHKQD FKVDRVRQKN EMDVDQKTDG ESRVLRHFRA  780
ALIDFVKELL RPTWREGHLS KDAHNTIAKK AVEKVLRTLQ PHQIPTTVES TRQYLSSSQP  840
KIAKLVEGYC TKYGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-40	C3H family protein