PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021635065.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 807aa MW: 89656.4 Da PI: 4.8371

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021635065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4e-08	288	307	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ff++ G+C +G++C+F H XP_021635065.1 288 ICDFFSK-GWCIRGSSCTFLH 307 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MPPPISAAQG SDDDQSPSSS GPPVEISDSD LEKDDQETEI EVEEEEIEND NEEEEYEEII 60 VVEEEEIEEE VEVEEDDMSD SSKEANAKSN DVSQDTEFEG TDRQLGLRST PGRSSLGLPS 120 NSLVEDGVCN SQFSGPLNEP VKLQEELHVN YEDSKKSGTN GENGSQRSLV KNDTEALMIK 180 KKSKEISKHY SDSMAHFFND EAMAAETTSP SSITVNEVTN ALAIKDSLGM ETNGILDSEV 240 DVNPMEKRSE DKEQTTSRFS RLVTLEKRTR SLSPSAEFED QNKRPAVICD FFSKGWCIRG 300 SSCTFLHIKN KTVNAKEQLE GDAAAANFSK RDQFDEGLKN ITEKQKFPGF PDLMAPSIGN 360 SAAFSCQFSS ERILALENGE SQRLHQLDDK HKSLSLQRED LSQGFHSDTQ QFPSSKDDHG 420 VSSSLKNVGI DNLRRSWPAS DYGSYASPIN RGTSLDGSLS SSVMLPSQQI SAWKGPLFSF 480 SSSLNTSPFG SQKLSDNDRN YHASRSLRQS ASLLFGSERE TSLLTSVSRG PLHYAEHKAK 540 ISSNDWEPSI PFRPSFSITY TVASSPGSQY DPLRDSIDLS TTGYRLPFKF SFVSQERSNL 600 NSSHQPIYDN SLSKTLGSEC HNDKSTVSLH GRFHENVLDK NCYTPGKVMG GTCVVSGQKG 660 TMPKEENASS SGHLSDVPNT SKIDVDCDSR HEYDAPRHKQ DFKVDRVRQK NEMDVDQKTD 720 GESRVLRHFR AALIDFVKEL LRPTWREGHL SKDAHNTIAK KAVEKVLRTL QPHQIPTTVE 780 STRQYLSSSQ PKIAKLVEGY CTKYGKS

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MPPPISAAQG SDDDQSPSSS GPPVEISDSD LEKDDQETEI EVEEEEIEND NEEEEYEEII  60
VVEEEEIEEE VEVEEDDMSD SSKEANAKSN DVSQDTEFEG TDRQLGLRST PGRSSLGLPS  120
NSLVEDGVCN SQFSGPLNEP VKLQEELHVN YEDSKKSGTN GENGSQRSLV KNDTEALMIK  180
KKSKEISKHY SDSMAHFFND EAMAAETTSP SSITVNEVTN ALAIKDSLGM ETNGILDSEV  240
DVNPMEKRSE DKEQTTSRFS RLVTLEKRTR SLSPSAEFED QNKRPAVICD FFSKGWCIRG  300
SSCTFLHIKN KTVNAKEQLE GDAAAANFSK RDQFDEGLKN ITEKQKFPGF PDLMAPSIGN  360
SAAFSCQFSS ERILALENGE SQRLHQLDDK HKSLSLQRED LSQGFHSDTQ QFPSSKDDHG  420
VSSSLKNVGI DNLRRSWPAS DYGSYASPIN RGTSLDGSLS SSVMLPSQQI SAWKGPLFSF  480
SSSLNTSPFG SQKLSDNDRN YHASRSLRQS ASLLFGSERE TSLLTSVSRG PLHYAEHKAK  540
ISSNDWEPSI PFRPSFSITY TVASSPGSQY DPLRDSIDLS TTGYRLPFKF SFVSQERSNL  600
NSSHQPIYDN SLSKTLGSEC HNDKSTVSLH GRFHENVLDK NCYTPGKVMG GTCVVSGQKG  660
TMPKEENASS SGHLSDVPNT SKIDVDCDSR HEYDAPRHKQ DFKVDRVRQK NEMDVDQKTD  720
GESRVLRHFR AALIDFVKEL LRPTWREGHL SKDAHNTIAK KAVEKVLRTL QPHQIPTTVE  780
STRQYLSSSQ PKIAKLVEGY CTKYGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-50	C3H family protein