PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021635113.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 455aa MW: 48987.6 Da PI: 8.1656

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021635113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.2e-11	55	81	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H+p XP_021635113.1 55 PGQPDCVYYLRTGLCGYGSNCRFNHPP 81 5789*********************97 PP
2	zf-CCCH	36.4	8.6e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_021635113.1 98 QPDCGYYLKTGTCKYGSTCKYHHPR 122 789********************96 PP
3	zf-CCCH	38.3	2.3e-12	144	167	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_021635113.1 144 KSCPYYMRTGSCKFGVACKFHHPQ 167 66********************97 PP
4	zf-CCCH	39.5	9.1e-13	292	317	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ Ck++H++ XP_021635113.1 292 DQPECRYFMNTGTCKYGSDCKYHHPK 317 689*********************96 PP
5	zf-CCCH	32.1	1.9e-10	339	362	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++ +G Ck+G++C+F H+ XP_021635113.1 339 QPVCSNYSMYGLCKFGPTCRFDHP 362 689********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MPDNSNNNNK NRQVKSNALP NQSPDNIEDA IWRLKIHDNQ EQGGMAPSSA YPDRPGQPDC 60 VYYLRTGLCG YGSNCRFNHP PAAQGTQFIE ELPERVGQPD CGYYLKTGTC KYGSTCKYHH 120 PRDRNGAGPV SFNILGLPMR QDEKSCPYYM RTGSCKFGVA CKFHHPQPVP LGAGLPLTGP 180 AGSGPMGSSI VPSSGLPYVG GLPTWSLPRA PYASGPHLQG PQAYMPVVLS PSQGVVSAQG 240 WNTYVGNLSP LSSASVLGSS LVYNSRDQGE SGSSGQIHLL STTTSHLPER PDQPECRYFM 300 NTGTCKYGSD CKYHHPKERI AQLATNSVGP PGLPSRPAQP VCSNYSMYGL CKFGPTCRFD 360 HPSPGYPYSY SLNLQPVSIF DSSLLTHPRM SAPALSAESP VSLSSKFPGW VRNPDGASNK 420 RQNSNANTKI ADDQPEQASS PPPHSSQASS EPSHD

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MPDNSNNNNK NRQVKSNALP NQSPDNIEDA IWRLKIHDNQ EQGGMAPSSA YPDRPGQPDC  60
VYYLRTGLCG YGSNCRFNHP PAAQGTQFIE ELPERVGQPD CGYYLKTGTC KYGSTCKYHH  120
PRDRNGAGPV SFNILGLPMR QDEKSCPYYM RTGSCKFGVA CKFHHPQPVP LGAGLPLTGP  180
AGSGPMGSSI VPSSGLPYVG GLPTWSLPRA PYASGPHLQG PQAYMPVVLS PSQGVVSAQG  240
WNTYVGNLSP LSSASVLGSS LVYNSRDQGE SGSSGQIHLL STTTSHLPER PDQPECRYFM  300
NTGTCKYGSD CKYHHPKERI AQLATNSVGP PGLPSRPAQP VCSNYSMYGL CKFGPTCRFD  360
HPSPGYPYSY SLNLQPVSIF DSSLLTHPRM SAPALSAESP VSLSSKFPGW VRNPDGASNK  420
RQNSNANTKI ADDQPEQASS PPPHSSQASS EPSHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-116	C3H family protein