PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021635419.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 542aa MW: 58671.6 Da PI: 9.0553

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021635419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.9e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C+k F r nL+ H r H XP_021635419.1 80 FICDVCNKGFQRDQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	12.4	0.00049	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_021635419.1 156 WKCEKCSKRYAVQSDWKAHSKIC 178 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MMKGVIMDEN LSNLTSASGE ISASSGSRIE TAGTMYLQQS FPSTNQAPPP KKRRSLPGNP 60 DPDAEVIALS PKTLLATNRF ICDVCNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVRKKV 120 YVCPEAACVH HDPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT 180 REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAITLNHP LLSSHQQPSS SASHMINLQG 240 LSVKREKESH HLFNTKPDSN VPPCLACQPV GEADPGPPQI NISSLLFPAN LDQPFLQHEN 300 PSPNPNLILP PFHTPTSSPH TSATALLQKA AQMGVTMSKP SPSPASASAA VMLRPHQAHM 360 SATTSGFSYT SIATSTAGSG LGLSSREDTE SGFGYDLASV GNKAATTSDI IGPSSLVLDI 420 MSSLSPTSGF DGSSFDEDFN GMLNPKRNGN NFQETHSNSK STESQISSRK DREDKTATAT 480 APGGGGRHGH GGGNDGLTRD FLGLKAFSHK DFFNLAGLGR HINSSSTYGQ QNQNQNQAPW 540 QG

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MMKGVIMDEN LSNLTSASGE ISASSGSRIE TAGTMYLQQS FPSTNQAPPP KKRRSLPGNP  60
DPDAEVIALS PKTLLATNRF ICDVCNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVRKKV  120
YVCPEAACVH HDPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAITLNHP LLSSHQQPSS SASHMINLQG  240
LSVKREKESH HLFNTKPDSN VPPCLACQPV GEADPGPPQI NISSLLFPAN LDQPFLQHEN  300
PSPNPNLILP PFHTPTSSPH TSATALLQKA AQMGVTMSKP SPSPASASAA VMLRPHQAHM  360
SATTSGFSYT SIATSTAGSG LGLSSREDTE SGFGYDLASV GNKAATTSDI IGPSSLVLDI  420
MSSLSPTSGF DGSSFDEDFN GMLNPKRNGN NFQETHSNSK STESQISSRK DREDKTATAT  480
APGGGGRHGH GGGNDGLTRD FLGLKAFSHK DFFNLAGLGR HINSSSTYGQ QNQNQNQAPW  540
QG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	119	KLKQRTNKEVRKK
2	483	493	GGGGRHGHGGG
3	484	494	GGGGRHGHGGG
4	485	495	GGGGRHGHGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-113	C2H2 family protein