PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021638558.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

FAR1

Protein Properties

Length: 1012aa MW: 115470 Da PI: 7.1522

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021638558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.9	4.1e-24	243	328	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YAk +GF vrk k ++s ng+i +r f Cskeg+r++++ + + ++ +r+etrtgC+a+++ + e +gkw+++++++eHnH+l XP_021638558.1 243 EFYKKYAKGIGFIVRKGKVRRS-SNGSIRERFFFCSKEGFRSKKQVN-KITKFKRKETRTGCRARIRCTVE-NGKWVISQFSQEHNHQL 328 6*****************99.8899*************999.99999*************9.**************9 PP
2	Homeobox	41.5	2.3e-13	916	969	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH.HH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR.ak 54 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFq +R a+ XP_021638558.1 916 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQEKRrAR 969 678899******************************************865155 PP

Sequence ? help Back to Top
Protein Sequence Length: 1012 aa Download sequence
MPKFCLNWSQ FSLLLFSTLF LPISLFHNPA TIFLFCFSNP MAETSNSVTG AAASSNSDLS 60 HGVDQDSIMN YWCDIYSSSQ DELAGPSILD HEWGYVFGSP SPKTKKRKKK DVGSTSTVYS 120 TSDLSESLSA ISAHLSLSSS GSSSGDGDQD QDIEKEVAGL MKNHVGILQD KKLDNSMDIF 180 PSFEFDVHSL SSESDEDDSL SSNTNEDEIQ ALSTFILREG TQKDHFQVPE LGMVFSSDDE 240 AYEFYKKYAK GIGFIVRKGK VRRSSNGSIR ERFFFCSKEG FRSKKQVNKI TKFKRKETRT 300 GCRARIRCTV ENGKWVISQF SQEHNHQLDG FSKTSEPHLS LPTKNEATVA KDARATKCFE 360 FGSTYVHERK INSLQPEDAQ SLINYFRHMQ VEDPSFFYAV QLDANGCMTN FFWTDGRSKI 420 DYEYFGDVLI LDTTFKMDKF EMICAPFWGL NHHQQYVLFG CAFLLDESID SFCWLFETFM 480 EAMRRCQPKT IFTDEGQPVG DAVKMVMPEA KHQLGLWYVR RNASKYLPTY YVQPRFESLF 540 NKCISDCHTE EEFESTWSSL LEQFDLHKNH WLNTLYKSRV RWAYIFNKES FCAGIRCSDN 600 IKSIFQNLMG ETITLQMFVQ QYFKAAEQQR REELYEDFHC NESVPEMTLD YGLVEKHAAG 660 IYTHTVFTAF QKELHKVLSV ALREISSNGP VSIFQLTEVG LKKSTVEYNC VNSSIVCSCK 720 KYESVGVLCA HTLKVLNARN VIHIPPQYIL KRWTKSAKDG VVADLYGQEM ADKRQQAVHL 780 LMRKALNVIT KGVSVNESQN IVDNCLDMAL KRVEGVLKTK SRNDLKTTEV HYEHNNGEAA 840 STDGLGRRFD VNWMSAEGAE KGAVLSSPNG ALSSFQMDFG IRSSGGGRCN KRDMEAIEAE 900 RASSRASDDE ENGLTRKKLR LSKEQSAFLE ESFKEHNTLN PKQKLALAKQ LNLRPRQVEV 960 WFQEKRRART KLKQTELDCE ILKRCCETLT EENRRLQKEL GALKISIWKR GL

Sequence ? help Back to Top

Protein Sequence Length: 1012 aa Download sequence

MPKFCLNWSQ FSLLLFSTLF LPISLFHNPA TIFLFCFSNP MAETSNSVTG AAASSNSDLS  60
HGVDQDSIMN YWCDIYSSSQ DELAGPSILD HEWGYVFGSP SPKTKKRKKK DVGSTSTVYS  120
TSDLSESLSA ISAHLSLSSS GSSSGDGDQD QDIEKEVAGL MKNHVGILQD KKLDNSMDIF  180
PSFEFDVHSL SSESDEDDSL SSNTNEDEIQ ALSTFILREG TQKDHFQVPE LGMVFSSDDE  240
AYEFYKKYAK GIGFIVRKGK VRRSSNGSIR ERFFFCSKEG FRSKKQVNKI TKFKRKETRT  300
GCRARIRCTV ENGKWVISQF SQEHNHQLDG FSKTSEPHLS LPTKNEATVA KDARATKCFE  360
FGSTYVHERK INSLQPEDAQ SLINYFRHMQ VEDPSFFYAV QLDANGCMTN FFWTDGRSKI  420
DYEYFGDVLI LDTTFKMDKF EMICAPFWGL NHHQQYVLFG CAFLLDESID SFCWLFETFM  480
EAMRRCQPKT IFTDEGQPVG DAVKMVMPEA KHQLGLWYVR RNASKYLPTY YVQPRFESLF  540
NKCISDCHTE EEFESTWSSL LEQFDLHKNH WLNTLYKSRV RWAYIFNKES FCAGIRCSDN  600
IKSIFQNLMG ETITLQMFVQ QYFKAAEQQR REELYEDFHC NESVPEMTLD YGLVEKHAAG  660
IYTHTVFTAF QKELHKVLSV ALREISSNGP VSIFQLTEVG LKKSTVEYNC VNSSIVCSCK  720
KYESVGVLCA HTLKVLNARN VIHIPPQYIL KRWTKSAKDG VVADLYGQEM ADKRQQAVHL  780
LMRKALNVIT KGVSVNESQN IVDNCLDMAL KRVEGVLKTK SRNDLKTTEV HYEHNNGEAA  840
STDGLGRRFD VNWMSAEGAE KGAVLSSPNG ALSSFQMDFG IRSSGGGRCN KRDMEAIEAE  900
RASSRASDDE ENGLTRKKLR LSKEQSAFLE ESFKEHNTLN PKQKLALAKQ LNLRPRQVEV  960
WFQEKRRART KLKQTELDCE ILKRCCETLT EENRRLQKEL GALKISIWKR GL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	109	KKRKK
2	915	921	TRKKLRL
3	966	974	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-98	FAR1 family protein