PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021639088.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

LBD

Protein Properties

Length: 239aa MW: 26111.1 Da PI: 7.8927

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021639088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.2	3.9e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++++ XP_021639088.1 2 SCNGCRVLRKGCSETCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCEA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_021639088.1 97 AVETVLR 103 *998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MSCNGCRVLR KGCSETCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCEAAVET VLRGGTLRPM PELLAAGGSP 120 SPASDEASEV EVACTDMWKL QDPNPIHHSR FSNSRSKVSP KRKIMDEPVN IVKQQQFQLQ 180 LPKNDLDLRL MQIFSPKTSP CKPENLRLGS PSMNSEESVT TTITCLESGP GGKLLNLFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	8e-95	LBD family protein