PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021639393.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 474aa MW: 50808.4 Da PI: 8.8394

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021639393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.5e-11	49	75	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG+C yG+rC+++H++ XP_021639393.1 49 PGVPDCVYYMRTGFCGYGGRCRYNHPR 75 57899********************96 PP
2	zf-CCCH	40.4	4.8e-13	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tGtCk+G++CkF+H++ XP_021639393.1 96 EPPCQFYLKTGTCKFGASCKFHHPK 120 79*********************96 PP
3	zf-CCCH	36.9	6.2e-12	142	166	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G +CkF+H++ XP_021639393.1 142 EKECSYYLKTGQCKFGITCKFHHPQ 166 689********************97 PP
4	zf-CCCH	36.5	8.2e-12	295	321	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ XP_021639393.1 295 PGEPECQYYLRTGDCKFGSSCRYHHPR 321 5799*********************96 PP
5	zf-CCCH	34.6	3.3e-11	342	367	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++++G Ck+G++CkF H++ XP_021639393.1 342 GVQPCAFYLQNGNCKFGATCKFDHPM 367 6789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MELYGRNHAR NGSQSGQQPE WSPVRGETGL EESMWRLGLA SSELYPERPG VPDCVYYMRT 60 GFCGYGGRCR YNHPRNRAAV EAAVRATGEY PERVGEPPCQ FYLKTGTCKF GASCKFHHPK 120 HGGGSLSHFP LNTHGYPLRL GEKECSYYLK TGQCKFGITC KFHHPQPAGT SLPESAPHFY 180 QPVQSPSITI PDQYGGGSTS LRVRPPVLPG SYVQGAYGPV LFSPGVVPIP GWSPYSAPVS 240 PVLSPGAQPA VGATSLYGVT QLSSSAPALA GPYASPSSVA GLSSGTKEQA FPERPGEPEC 300 QYYLRTGDCK FGSSCRYHHP RDRVVPRTNC VLSPLGLPLR PGVQPCAFYL QNGNCKFGAT 360 CKFDHPMATV RYSPSTSSLI DMPVSPYPVG SLLATLVPSS SSAELRPELI GVTKKDPYLS 420 RIPPSGNTSS NSVGLIFSQT GSLPLPELQH SIQSSVPLAG GRSTRQGGEV RHSS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MELYGRNHAR NGSQSGQQPE WSPVRGETGL EESMWRLGLA SSELYPERPG VPDCVYYMRT  60
GFCGYGGRCR YNHPRNRAAV EAAVRATGEY PERVGEPPCQ FYLKTGTCKF GASCKFHHPK  120
HGGGSLSHFP LNTHGYPLRL GEKECSYYLK TGQCKFGITC KFHHPQPAGT SLPESAPHFY  180
QPVQSPSITI PDQYGGGSTS LRVRPPVLPG SYVQGAYGPV LFSPGVVPIP GWSPYSAPVS  240
PVLSPGAQPA VGATSLYGVT QLSSSAPALA GPYASPSSVA GLSSGTKEQA FPERPGEPEC  300
QYYLRTGDCK FGSSCRYHHP RDRVVPRTNC VLSPLGLPLR PGVQPCAFYL QNGNCKFGAT  360
CKFDHPMATV RYSPSTSSLI DMPVSPYPVG SLLATLVPSS SSAELRPELI GVTKKDPYLS  420
RIPPSGNTSS NSVGLIFSQT GSLPLPELQH SIQSSVPLAG GRSTRQGGEV RHSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein