PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021639660.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

MIKC_MADS

Protein Properties

Length: 237aa MW: 27494.3 Da PI: 9.6464

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021639660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.6	5.2e-26	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n+s rqvtfskRr+g++KKA+EL +LCdaev + ifss+gklye++s XP_021639660.1 10 RIDNSSSRQVTFSKRRKGLIKKAKELAILCDAEVGLAIFSSSGKLYEFAS 59 9***********************************************86 PP
2	K-box	80.1	5.3e-27	78	170	8	98
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + + +++ + +q+e++ L+++++nLq+++R+llGe+L Ls+k+Lq+Le+qLe sl+ iR kK+++l+++i+el +k + +++en +L kk+ XP_021639660.1 78 QlmNPTSEVKCWQREATVLRQQLHNLQESHRKLLGEQLYGLSVKDLQSLENQLEMSLQGIRMKKEQILTDEIQELNRKDNLIHQENLELWKKV 170 233678899*********************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRGKIVIQR IDNSSSRQVT FSKRRKGLIK KAKELAILCD AEVGLAIFSS SGKLYEFAST 60 SMKSVIERYN KTKEENQQLM NPTSEVKCWQ REATVLRQQL HNLQESHRKL LGEQLYGLSV 120 KDLQSLENQL EMSLQGIRMK KEQILTDEIQ ELNRKDNLIH QENLELWKKV NLIRQENMEL 180 YNKVYGTRDK NATTSNSFIL YGFNSEESSQ IPTHLQLSQP EQPNYEAPPK ATRLQLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-110	MIKC_MADS family protein