PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021639968.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

CO-like

Protein Properties

Length: 449aa MW: 50390.4 Da PI: 6.2912

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021639968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.2	4e-09	16	58	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++ XP_021639968.1 16 ARACDSCIRKRARWYCAADDAFLCQVCDSSVHSAnhlahrHKR 58 578****************************955777744554 PP
2	CCT	68.3	2e-23	401	444	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_021639968.1 401 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKKA 444 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MISKKNVANA VGGKTARACD SCIRKRARWY CAADDAFLCQ VCDSSVHSAN HLAHRHKRVR 60 LKTASFKSLD LVPKENCAPS WHHGFTRKAR TPRHGKPVSH SKIEKKLRNP IPLVPEVGSD 120 EISHGENEEE QLLYRVPVFD PFVAQLCNST TISNNEAETT TAADNDSDQT VADASGIESK 180 ASLGAGGKEF ESLHGFLPSD MDLAEFAADV ESLLGRGLEN ESVGMEELGI VGCKEQKELQ 240 REYYVGRGMV KLEDEREGIE KEEEAVRDCY VDTDETEMAR EPPFELTFDY DSATCGEEDE 300 KVGTGERDLK NNEEYEDDGE NLKKKKKKRK ILLKLDYEAV ITAWASQGSP WTTGNRPDID 360 PDECWPEYCM GICGAELHHH GYGDPTTSVG VQHPTMADGG REARVSRYRE KRRTRLFSKK 420 IRYEVRKLNA EKRPRMKGRF VKKASFAGP

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MISKKNVANA VGGKTARACD SCIRKRARWY CAADDAFLCQ VCDSSVHSAN HLAHRHKRVR  60
LKTASFKSLD LVPKENCAPS WHHGFTRKAR TPRHGKPVSH SKIEKKLRNP IPLVPEVGSD  120
EISHGENEEE QLLYRVPVFD PFVAQLCNST TISNNEAETT TAADNDSDQT VADASGIESK  180
ASLGAGGKEF ESLHGFLPSD MDLAEFAADV ESLLGRGLEN ESVGMEELGI VGCKEQKELQ  240
REYYVGRGMV KLEDEREGIE KEEEAVRDCY VDTDETEMAR EPPFELTFDY DSATCGEEDE  300
KVGTGERDLK NNEEYEDDGE NLKKKKKKRK ILLKLDYEAV ITAWASQGSP WTTGNRPDID  360
PDECWPEYCM GICGAELHHH GYGDPTTSVG VQHPTMADGG REARVSRYRE KRRTRLFSKK  420
IRYEVRKLNA EKRPRMKGRF VKKASFAGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	322	330	LKKKKKKRK
2	323	329	KKKKKKR
3	324	330	KKKKKKR
4	325	330	KKKKRK
5	412	428	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-102	CO-like family protein