PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021640630.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 686aa MW: 78960.4 Da PI: 5.4147

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021640630.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00068	510	532	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_021640630.1 510 FSCNYCQRKFYSSQALGGHQNAH 532 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MLMAQDLSFS RTLNPTFSPF PIQPKALALK PRLLSTVSLS RRNASSRGEI RAFAGRSKKK 60 PGGTSPGRIE GNPEYLRQVK RSARQKSRKL AESFFYRLKN PNKNYADNFS EEELNLIGLG 120 YDRMVRFMDK DDPNLKHPYD WYKYGEFGPY SWRGVVLGDP IAGRFTDERV TMYSEVRDQE 180 EWEKIEQFEM EVDFGERLKK LDKNVGFRHY WVFVRHPKWR LSEQPWQQWT LVSEVVLEAG 240 KQRIDKWNLM ARLGNQTREL ITQCAAWFRP DIIYVKRPVY QCRFEPQVDF FRALTPLLDP 300 KTERDFMCEL RNEEDGGNVE MCTYFEGLCK IVKVSRKAFV DDVVNAYEKL SDEKKSLCLE 360 FLLMNHPVLL LHPYTKEWKA KLEEMEMGCD APDDDDDHNS NENEFTDWIE DDGDGDDRED 420 VVADMEEGWD DGELETEAGG LNEEEDDDEE EEERDQKHQE DTSHDLVLDL SLSGKDSKPK 480 LNLINSFDME SSQKSSLDTP QGNETEPRIF SCNYCQRKFY SSQALGGHQN AHKRERTLAK 540 RGQRISAGSF GLGHHPNSHL NRYSSMASLP LHGSLNRSLG IQVHSMIHKP TFVPFSTIGS 600 SNIYGQNGWS RQPIDQQPAV GRLASDSFHT GTNMGSFPSN GVARFEIAEK FSPAGERIGG 660 YWCDAGVNHL KTKQEDLQKL DLSLKL

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MLMAQDLSFS RTLNPTFSPF PIQPKALALK PRLLSTVSLS RRNASSRGEI RAFAGRSKKK  60
PGGTSPGRIE GNPEYLRQVK RSARQKSRKL AESFFYRLKN PNKNYADNFS EEELNLIGLG  120
YDRMVRFMDK DDPNLKHPYD WYKYGEFGPY SWRGVVLGDP IAGRFTDERV TMYSEVRDQE  180
EWEKIEQFEM EVDFGERLKK LDKNVGFRHY WVFVRHPKWR LSEQPWQQWT LVSEVVLEAG  240
KQRIDKWNLM ARLGNQTREL ITQCAAWFRP DIIYVKRPVY QCRFEPQVDF FRALTPLLDP  300
KTERDFMCEL RNEEDGGNVE MCTYFEGLCK IVKVSRKAFV DDVVNAYEKL SDEKKSLCLE  360
FLLMNHPVLL LHPYTKEWKA KLEEMEMGCD APDDDDDHNS NENEFTDWIE DDGDGDDRED  420
VVADMEEGWD DGELETEAGG LNEEEDDDEE EEERDQKHQE DTSHDLVLDL SLSGKDSKPK  480
LNLINSFDME SSQKSSLDTP QGNETEPRIF SCNYCQRKFY SSQALGGHQN AHKRERTLAK  540
RGQRISAGSF GLGHHPNSHL NRYSSMASLP LHGSLNRSLG IQVHSMIHKP TFVPFSTIGS  600
SNIYGQNGWS RQPIDQQPAV GRLASDSFHT GTNMGSFPSN GVARFEIAEK FSPAGERIGG  660
YWCDAGVNHL KTKQEDLQKL DLSLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	4e-47	C2H2 family protein