PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021641310.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 424aa MW: 47277 Da PI: 8.4248

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021641310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_021641310.1 56 YVCEICNQGFQRDQNLQMHRRRH 78 9*********************9 PP
2	zf-C2H2	16.1	3.1e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_021641310.1 133 WVCEKCSKGYAVQSDYKAHLKTC 155 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MLDNTNPSVP SPSSDPFPAL GNGVTNKKKR KPAGTPDPDA EVVSLSPRTL LESDRYVCEI 60 CNQGFQRDQN LQMHRRRHKV PWKLLKRETQ EVKKRVYVCP EPSCLHHDPC HALGDLVGIK 120 KHFRRKHSNH KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA 180 CTVRRGQPEL QALQPACSSR TASSTSPSSD ANFNIAPLQG LPIPKPSEPV FLYSSSDRYD 240 ASTSSQQEYN LELQLLPSST TTRLSQNPDE RYPTNLKLSI GSSGRSEKNE SNQQASLEAS 300 REKSAGDPTL EAEKMKEFAN EQLRLAMAEK AYAEGARQQA KRQLEMAELE FANAKRIRQQ 360 AQTELEKAQV LREQATKKIS STIMQITCQA CKQQFQSPTV AAPADETSLA MSYMSSATTE 420 GEGE

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MLDNTNPSVP SPSSDPFPAL GNGVTNKKKR KPAGTPDPDA EVVSLSPRTL LESDRYVCEI  60
CNQGFQRDQN LQMHRRRHKV PWKLLKRETQ EVKKRVYVCP EPSCLHHDPC HALGDLVGIK  120
KHFRRKHSNH KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA  180
CTVRRGQPEL QALQPACSSR TASSTSPSSD ANFNIAPLQG LPIPKPSEPV FLYSSSDRYD  240
ASTSSQQEYN LELQLLPSST TTRLSQNPDE RYPTNLKLSI GSSGRSEKNE SNQQASLEAS  300
REKSAGDPTL EAEKMKEFAN EQLRLAMAEK AYAEGARQQA KRQLEMAELE FANAKRIRQQ  360
AQTELEKAQV LREQATKKIS STIMQITCQA CKQQFQSPTV AAPADETSLA MSYMSSATTE  420
GEGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	KKKRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-156	C2H2 family protein