PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021641705.1
Organism
Hevea brasiliensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27466.3 Da    PI: 7.5488
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021641705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.5e-161151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+s r+ t+ +R++g++KK +ELS+LC+++++ ii+s++
  XP_021641705.1 11 ITNDSARKETLKRRKKGLMKKVSELSTLCGIDACAIIYSPH 51
                    89*************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MTRKKVKLAY ITNDSARKET LKRRKKGLMK KVSELSTLCG IDACAIIYSP HDSQPEVWPS  60
LVGVQSMLAQ FENIPQMEQS KKMVNQDSFL RERICKANEH LKKQRKDNRE KEMTQLMFQC  120
LIGKSLNSLN MVDLNDLNWL IDQNLKEIHK RVETLNKEAN SQVGVALASG AGPSGEVNDI  180
ATQQEADRQA SEVNMEAMQK QVWHINWINP QEHIGFGGDE VILPFWDNNH NDLWSSAFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYITNDSARKETLKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-66M-type_MADS family protein