PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021642366.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

M-type_MADS

Protein Properties

Length: 358aa MW: 40748.1 Da PI: 6.8448

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021642366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.1	2.8e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA+ELS+LCd+++ +++fs+tg+ XP_021642366.1 9 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDIVLLMFSPTGR 53 689****************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIVLLMFSP TGRPTLYQGE 60 HSNIEDVIAK FAQLTPQERA KRKVESLEVL KKTFKKLDHD VNMQDFLGSS TQTVEELTNQ 120 VKFLQAQLTE IHNRMSYWSN PDKVDSIEHL SQMEESLKES INQIRLQKEN FGSCQLVRLE 180 CSSQFQNGMD LPLMINGMQE AQPLSWLPNN GNQHLILSNE QNFLPQRDKE CSTDASLPGY 240 SVYYDTGKHT EIGNPRPVDN IGQGSAVFSN LSSNTCLSVQ LDEQFSYPPF SSLNLPEVKK 300 MKPEMQMNSQ GICSVHQVNS NFELPRSIYE NGHHTWVSAS GPCSIAMFSE NQYHQQPN

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIVLLMFSP TGRPTLYQGE  60
HSNIEDVIAK FAQLTPQERA KRKVESLEVL KKTFKKLDHD VNMQDFLGSS TQTVEELTNQ  120
VKFLQAQLTE IHNRMSYWSN PDKVDSIEHL SQMEESLKES INQIRLQKEN FGSCQLVRLE  180
CSSQFQNGMD LPLMINGMQE AQPLSWLPNN GNQHLILSNE QNFLPQRDKE CSTDASLPGY  240
SVYYDTGKHT EIGNPRPVDN IGQGSAVFSN LSSNTCLSVQ LDEQFSYPPF SSLNLPEVKK  300
MKPEMQMNSQ GICSVHQVNS NFELPRSIYE NGHHTWVSAS GPCSIAMFSE NQYHQQPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-112	M-type_MADS family protein