PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021643121.1
Organism
Hevea brasiliensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family C3H
Protein Properties Length: 295aa    MW: 30756.9 Da    PI: 9.8002
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021643121.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063659225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_021643121.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                    7789******************** PP
2zf-CCCH26.88.8e-09101126227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k +lC+ +     Ck+Gd+C+FaHg+
  XP_021643121.1 101 KSRLCNKYNTAEGCKFGDKCHFAHGE 126
                     679*********************96 PP
3zf-CCCH30.65.9e-10262286126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC +f + G C +G rC+FaHg
  XP_021643121.1 262 YKTKLCENFTK-GSCTFGQRCHFAHG 286
                     9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MMNAKKRGKP DAFNANGGFK KSKQEMDSLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYNAVAQ MMNLGPAVTP VSRNMAAPPA IPNGSAQSAV KSRLCNKYNT AEGCKFGDKC  120
HFAHGEWELG KPIAPSHDDP RAIGTIPGRM GGRMEPPLPG PAASFGASAT AKISVEASLA  180
GAIIGKGGVN SKQICRQTGA KLSIREHETD PNLRNIEFEG SFEQIKQASA MVSELIASVG  240
SANAPAKATG ASGGHAHPGS NYKTKLCENF TKGSCTFGQR CHFAHGAAEL RKSGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-68C3H family protein