PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021643812.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

CO-like

Protein Properties

Length: 523aa MW: 58291.1 Da PI: 5.8479

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021643812.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.1	1.3e-06	47	83	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 C+ + + ++ C d ++++C+ C +++H g H+ XP_021643812.1 47 LCDSCRNRPAYARCLDHRMFVCRVCDQSIH-GvspqHQ 83 7*****************************.7677776 PP
2	CCT	32.8	2.5e-12	469	510	3	44
CCT 3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 + ++RYk K+ktR eK+irY +Ka+ + R+RvKGr k++ XP_021643812.1 469 NGMTRYKVKQKTRVQEKHIRYGLKKARSDVRKRVKGRIMKKE 510 569**********************************98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MEKICEFCTA LRPVVYCKAD AAYLCLSCDA KVHSANALSN RHLRTLLCDS CRNRPAYARC 60 LDHRMFVCRV CDQSIHGVSP QHQKWSVSSY LGCPSAKDFA ALWGFELEEL DKSAIQDQLF 120 PASCASVQPS AASFDIPRPR ESCQQIGSSS STSKVNYSTF ASGTHSEVQW SSKQTEISGT 180 GQQQQNNDFI LQQILDLKRL QLTEMDNSSP VVRAREEMDV SSSIFETLDM LDDSVDHFRH 240 SQVPGNSGYP LQDLKVDSLP LSFSQPENLP LPSTAANPLL GESFWQCKSP IQSSQLWSQN 300 MQDLGVCEDI VSHDDFNMPD LDITFRNFEE LFGTEKDPDP IRALLDDKGA SSSSVEDMSL 360 GTSHNRNART KEDTFIASSF YISQPGHMDK DKVPSSQIYD LPGTLHSPQT IRPSYSAMSF 420 SLSRFSAESS GTEYLDSGLS PHVTGAEVGA EVSCHLPDIE GAHSDIKENG MTRYKVKQKT 480 RVQEKHIRYG LKKARSDVRK RVKGRIMKKE DYDSDTINVT RSV

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MEKICEFCTA LRPVVYCKAD AAYLCLSCDA KVHSANALSN RHLRTLLCDS CRNRPAYARC  60
LDHRMFVCRV CDQSIHGVSP QHQKWSVSSY LGCPSAKDFA ALWGFELEEL DKSAIQDQLF  120
PASCASVQPS AASFDIPRPR ESCQQIGSSS STSKVNYSTF ASGTHSEVQW SSKQTEISGT  180
GQQQQNNDFI LQQILDLKRL QLTEMDNSSP VVRAREEMDV SSSIFETLDM LDDSVDHFRH  240
SQVPGNSGYP LQDLKVDSLP LSFSQPENLP LPSTAANPLL GESFWQCKSP IQSSQLWSQN  300
MQDLGVCEDI VSHDDFNMPD LDITFRNFEE LFGTEKDPDP IRALLDDKGA SSSSVEDMSL  360
GTSHNRNART KEDTFIASSF YISQPGHMDK DKVPSSQIYD LPGTLHSPQT IRPSYSAMSF  420
SLSRFSAESS GTEYLDSGLS PHVTGAEVGA EVSCHLPDIE GAHSDIKENG MTRYKVKQKT  480
RVQEKHIRYG LKKARSDVRK RVKGRIMKKE DYDSDTINVT RSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	492	503	KKARSDVRKRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	9e-31	CO-like family protein