PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021645205.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 403aa MW: 45711.8 Da PI: 7.3931

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021645205.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.9	1.8e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +++r G+C+yG++C++ H+ XP_021645205.1 34 ICTYYQR-GICSYGSQCRYEHV 54 79999.*********997 PP
2	zf-CCCH	18.6	3.3e-06	141	164	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++lC+ fa+ G C++G +C+ +Hg XP_021645205.1 141 GHSLCS-FAAAGNCPRGVKCPHIHG 164 568999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MSRRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQR GICSYGSQCR YEHVKPSRSD 60 LASSSTTTPQ QSMVSTSVPV VHPVRTGFSR GTSVPGASGE LSASSRPYFP PTKPAWNLVF 120 APNNILENGG IIEPRNVKPE GHSLCSFAAA GNCPRGVKCP HIHGDICPTC GKHCLHPFRP 180 EEREEHLKTC EKKQKHLEAL KRSQEIECCV CLDRVLSKPT AAERKFGLLS ECDHPFCISC 240 IRNWRSSAPT SGMDVNTALR ACPICRKLSY FVVPSVLWYS SKEEKQEIID SYKAKLRSID 300 CKYFDFGNGN CPFGTSCFYK HTVKPGSYTW KYHRPPPRRP RPRRTSFVDN MTLFDVFEHL 360 FEEDELDIFD AEDYFDEDDM AFLLMQMDIG SGDTSSDDEN YLF

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MSRRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQR GICSYGSQCR YEHVKPSRSD  60
LASSSTTTPQ QSMVSTSVPV VHPVRTGFSR GTSVPGASGE LSASSRPYFP PTKPAWNLVF  120
APNNILENGG IIEPRNVKPE GHSLCSFAAA GNCPRGVKCP HIHGDICPTC GKHCLHPFRP  180
EEREEHLKTC EKKQKHLEAL KRSQEIECCV CLDRVLSKPT AAERKFGLLS ECDHPFCISC  240
IRNWRSSAPT SGMDVNTALR ACPICRKLSY FVVPSVLWYS SKEEKQEIID SYKAKLRSID  300
CKYFDFGNGN CPFGTSCFYK HTVKPGSYTW KYHRPPPRRP RPRRTSFVDN MTLFDVFEHL  360
FEEDELDIFD AEDYFDEDDM AFLLMQMDIG SGDTSSDDEN YLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-143	C3H family protein