PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021645974.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 298aa MW: 33056.7 Da PI: 9.2748

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021645974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.6	2.8e-10	94	118	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_021645974.1 94 FKTKLCCKFRA-GTCPYVTNCNFAHS 118 69*******.***********8 PP
2	zf-CCCH	18.9	2.7e-06	166	191	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_021645974.1 166 YKGRHCKKFYTEEGCPYGDNCTFLHD 191 78888********************7 PP
3	zf-CCCH	42.6	1e-13	232	257	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_021645974.1 232 WKTRICNKWELTGYCPFGSKCHFAHG 257 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MDYGRDFSSA NVVHVIPGTG PENWFPNSTD SSSVWATEDD YHAWNNFDSP SDSTPSNSNF 60 QSSHTRSGSE PPNKKSKNNS QELTSKKSIG KMFFKTKLCC KFRAGTCPYV TNCNFAHSIE 120 ELRRPPSNWQ EIVAAHEEDK GNIMEIREEF QIPSIGGFGG DSQRSYKGRH CKKFYTEEGC 180 PYGDNCTFLH DEQSKNRESV AISLGPGGYG GVTGGGGTSG SASGGNVKPS NWKTRICNKW 240 ELTGYCPFGS KCHFAHGAGG RKHLKNVRMS IRFNRLVNKS RKGNLKNLER GKKHICFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-92	C3H family protein