PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021646076.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 442aa MW: 48339.7 Da PI: 8.5111

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021646076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.6e-11	52	78	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_021646076.1 52 PGEPDCSYYIRTGLCRFGATCRFNHPP 78 5789*********************97 PP
2	zf-CCCH	39.2	1.2e-12	99	123	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_021646076.1 99 QPECQYYLKTGTCKFGATCKFHHPK 123 799********************96 PP
3	zf-CCCH	36.9	6.1e-12	147	169	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ XP_021646076.1 147 ECAYYLRTGQCKFGSTCKFHHPQ 169 7********************97 PP
4	zf-CCCH	37	5.7e-12	303	329	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_021646076.1 303 PGQPECQFYMKTGDCKFGPVCRFHHPR 329 5789*********************96 PP
5	zf-CCCH	39	1.4e-12	349	375	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ XP_021646076.1 349 PGEPLCIFYSRYGVCKFGPSCKFDHPM 375 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MDFDAGITMS RTGPPPVTEG PSLSPSLNED AMWQMNLRTN ETMESGPYPE RPGEPDCSYY 60 IRTGLCRFGA TCRFNHPPNR KLAIAAARMK GEFPERIGQP ECQYYLKTGT CKFGATCKFH 120 HPKEKAGIAG RVSLNILGYP LRPNEIECAY YLRTGQCKFG STCKFHHPQP ANVMVPLRGS 180 PVYPTVQSPT TPGQQSYPGG LTNWSRASFI TSPRWQAPSS YTPLILPQGV VSVPGWNAYS 240 GQLGSVSSPE GQQQTGNSQI YGTSRQSESM NAGSQGTLSP FRSGSVPVGF YTLQRENVFP 300 ERPGQPECQF YMKTGDCKFG PVCRFHHPRE RLIPPPDCVL SPLGLPLRPG EPLCIFYSRY 360 GVCKFGPSCK FDHPMGIFTY NFSASSSADA PVRRFLGTSS GSAALTLSPE GLVEAGSTKP 420 RRLSLSEPRQ MPSGDDNIDT EG

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MDFDAGITMS RTGPPPVTEG PSLSPSLNED AMWQMNLRTN ETMESGPYPE RPGEPDCSYY  60
IRTGLCRFGA TCRFNHPPNR KLAIAAARMK GEFPERIGQP ECQYYLKTGT CKFGATCKFH  120
HPKEKAGIAG RVSLNILGYP LRPNEIECAY YLRTGQCKFG STCKFHHPQP ANVMVPLRGS  180
PVYPTVQSPT TPGQQSYPGG LTNWSRASFI TSPRWQAPSS YTPLILPQGV VSVPGWNAYS  240
GQLGSVSSPE GQQQTGNSQI YGTSRQSESM NAGSQGTLSP FRSGSVPVGF YTLQRENVFP  300
ERPGQPECQF YMKTGDCKFG PVCRFHHPRE RLIPPPDCVL SPLGLPLRPG EPLCIFYSRY  360
GVCKFGPSCK FDHPMGIFTY NFSASSSADA PVRRFLGTSS GSAALTLSPE GLVEAGSTKP  420
RRLSLSEPRQ MPSGDDNIDT EG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein