PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021646262.1
Organism
Hevea brasiliensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 26169.5 Da    PI: 8.9657
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021646262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.7e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+tgk++e++s
  XP_021646262.1  9 KRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEFIS 59
                    79***********************************************86 PP
2K-box87.52.6e-2971168198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq++ g +l+++++e++q++l+kL++ +++L+r +R+++GedL++ s+ eL+ Le++++++l+ +R++K+++l++q+++ +kk ++l+e++ +L 
  XP_021646262.1  71 YQNTLGIDLWSTHYERMQEHLRKLREINNKLRRDIRQRMGEDLNDVSFDELRGLEERMDSALELVRERKYHVLKTQTDTRRKKVRNLDERHGDLL 165
                     78888999***********************************************************************************9997 PP

           K-box  96 kkl 98 
                      ++
  XP_021646262.1 166 LEY 168
                     665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MGRGKIEIKR IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN TGKFHEFISP  60
TTTTKTMFDQ YQNTLGIDLW STHYERMQEH LRKLREINNK LRRDIRQRMG EDLNDVSFDE  120
LRGLEERMDS ALELVRERKY HVLKTQTDTR RKKVRNLDER HGDLLLEYEA KCEDLQYGLV  180
DNEGDYESTI TLANGASNLY AFRLHHGHPT ANGGGYGSQE LRLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-78MIKC_MADS family protein