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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_021647146.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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| Family | MYB | ||||||||
| Protein Properties | Length: 252aa MW: 28840.8 Da PI: 8.8584 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 52.7 | 9.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l +v+++G +W+ +++ g+ R++k+c++rw +yl
XP_021647146.1 14 KGKWTPEEDLKLMAYVTRYGCWNWRQLPKYAGLSRCGKSCRLRWMNYL 61
79******************99************************97 PP
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| 2 | Myb_DNA-binding | 53.2 | 6.7e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T+eE++ ++++++ lG++ W++Ia+ ++ gRt++++k++w++
XP_021647146.1 67 RGNYTKEEEDTIIRLHESLGNR-WSAIAAQLP-GRTDNEIKNHWHT 110
899*******************.*********.***********97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 252 aa Download sequence |
MARTLCWDKS CLKKGKWTPE EDLKLMAYVT RYGCWNWRQL PKYAGLSRCG KSCRLRWMNY 60 LRPNIKRGNY TKEEEDTIIR LHESLGNRWS AIAAQLPGRT DNEIKNHWHT KLKKRKQKDT 120 VKPDSSDLSQ RRKRQKKDTK PKIDPISPGT TPQIIESISS SLSPKPSTSD FSSSTTANNI 180 AVTSSCSDLK SDDEFAFLEA YEAPIGNFWT EPFLADNYYM PSEFLPPLLD PVSPLLDGEL 240 LCSYGVCEQY GV |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 113 | 134 | KKRKQKDTVKPDSSDLSQRRKR |
| 2 | 113 | 137 | KKRKQKDTVKPDSSDLSQRRKRQKK |
| 3 | 113 | 142 | KKRKQKDTVKPDSSDLSQRRKRQKKDTKPK |
| 4 | 114 | 135 | KKRKQKDTVKPDSSDLSQRRKR |
| 5 | 114 | 137 | KRKQKDTVKPDSSDLSQRRKRQKK |
| 6 | 131 | 138 | RRKRQKKD |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G23250.1 | 1e-58 | MYB family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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