PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021649617.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

MYB

Protein Properties

Length: 1220aa MW: 136253 Da PI: 6.1121

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021649617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.4	5e-11	439	483	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eEd++l+ v++ G+ +W Ia+ +gk+Rt+ qc r+q XP_021649617.1 439 SKWTAEEDKKLLFIVQEKGMTNWLDIAASLGKNRTPFQCLARFQR 483 58***************************************9995 PP
2	Myb_DNA-binding	39.3	1.5e-12	492	535	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd +l av +G ++W ++a+t+ gRt+ qc +rw k XP_021649617.1 492 REWTKEEDAQLRIAVGTYGEHDWQSVASTLE-GRTGTQCSNRWKK 535 68***************************.*********87 PP
3	Myb_DNA-binding	47.2	5.2e-15	544	588	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+WT +E ++l+ av ++G+++W++Iar ++ Rt+ qc++rw + XP_021649617.1 544 KGKWTLDERKRLKVAVMLFGPRNWNKIARFVP-ERTAPQCRERWVN 588 79****************************.*********76 PP
4	Myb_DNA-binding	50.7	4.1e-16	597	641	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++WT+eEd++l+ a++++G W++Ia++++ Rt+ qc+ rw +l XP_021649617.1 597 DKWTEEEDLRLKAAIEEYGYC-WAKIAKCLP-PRTDSQCRRRWKVLL 641 69***************99.*****.9********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1220 aa Download sequence
MSSLLQNDDA DQDLCSDDDE IDDGFNDDIE ALRRACTLTG TNLSDVNIDN GENNRSLSAE 60 GDGDSYSGEG EEDEDDFKLF RIIQNRFSFG TDSCEPIYSK PLCAFPLDFD DEEDDFETLC 120 AVRKRFSAYD NSDISEGKLE NLAEKSEGVD ASSVVSKLVT SDDSVIDRTA CKVFPDTEEG 180 LNSTLLSDNM EIQPSGYIEQ QHSLDACKFS SLGRKDSSSF PKSAQVFIDA IKKNRSCQKF 240 LRKKLAHIEA RIEENKKLKE RVKILRDFQV SCKKITGRAL AQGKDPRIQL ISTPRISNSR 300 DSKVNDKKVS TMHNGPPENS HVANYRMALT NFPLNLNRKN WTEAEKENLQ KGIRQQFQEM 360 VLQFSVDQLS GSEGSPGNVN DLDAVLASIR EMEITPERIR EFLPKVNWDQ LASLYVVGRS 420 GAECEAKWLN SEDPLINHSK WTAEEDKKLL FIVQEKGMTN WLDIAASLGK NRTPFQCLAR 480 FQRSLNAHII KREWTKEEDA QLRIAVGTYG EHDWQSVAST LEGRTGTQCS NRWKKSIHPG 540 NGRKGKWTLD ERKRLKVAVM LFGPRNWNKI ARFVPERTAP QCRERWVNSE DPSLNMDKWT 600 EEEDLRLKAA IEEYGYCWAK IAKCLPPRTD SQCRRRWKVL LPHEVPLLQA ARKTQKVAII 660 GNFVDRESER PALGPHDFVP LPMITSAFEP EKQNQSRKRK RKSREGEVSG KKKNAAPGNT 720 SKRLQSKRPN EGMQISSVED PGITNGTEVA TFGESGMVVT KSSSSEKNPH MKTYQDIADA 780 QDGDPKKKKK LPKLPLKRNV LVEIAGNSQS CLLSHPESLE LGISNVDGLQ TFGGESETSS 840 EKRKVQEQHS EANTCTNTGE EEGSEPITDV IELDHDHCDS NVLAVNIVDQ DETVGQPDAS 900 NKEVTNLSLE GKAFMELADS NCLTLPPENL EARVTNAGGV EKSSLDGISL IKASKAPNCT 960 SKSSTELSGQ CNFVVSNPCH HDGHRKSKLS KSSNKQVLED NGKLASFCQK ISKKRRLRVD 1020 KNDKQILETN DEDDVTLASF CRSISKKRRV RVVKNADQTC PPSDLVSKRV YQHDYPNKMP 1080 SFMLDGEAQT CYSGGFAENV LLEEPSVVDT AKTDAPQEPM RKPISIDHDS DLEMSDITLA 1140 SLLHNKQKRK GQVLAKSRDQ PHSLSRMKKR STPLAKGVVQ CCNGRMLETS SGCEIQSCGT 1200 SSIPTITGDD KEPDGQDVAD

Sequence ? help Back to Top

Protein Sequence Length: 1220 aa Download sequence

MSSLLQNDDA DQDLCSDDDE IDDGFNDDIE ALRRACTLTG TNLSDVNIDN GENNRSLSAE  60
GDGDSYSGEG EEDEDDFKLF RIIQNRFSFG TDSCEPIYSK PLCAFPLDFD DEEDDFETLC  120
AVRKRFSAYD NSDISEGKLE NLAEKSEGVD ASSVVSKLVT SDDSVIDRTA CKVFPDTEEG  180
LNSTLLSDNM EIQPSGYIEQ QHSLDACKFS SLGRKDSSSF PKSAQVFIDA IKKNRSCQKF  240
LRKKLAHIEA RIEENKKLKE RVKILRDFQV SCKKITGRAL AQGKDPRIQL ISTPRISNSR  300
DSKVNDKKVS TMHNGPPENS HVANYRMALT NFPLNLNRKN WTEAEKENLQ KGIRQQFQEM  360
VLQFSVDQLS GSEGSPGNVN DLDAVLASIR EMEITPERIR EFLPKVNWDQ LASLYVVGRS  420
GAECEAKWLN SEDPLINHSK WTAEEDKKLL FIVQEKGMTN WLDIAASLGK NRTPFQCLAR  480
FQRSLNAHII KREWTKEEDA QLRIAVGTYG EHDWQSVAST LEGRTGTQCS NRWKKSIHPG  540
NGRKGKWTLD ERKRLKVAVM LFGPRNWNKI ARFVPERTAP QCRERWVNSE DPSLNMDKWT  600
EEEDLRLKAA IEEYGYCWAK IAKCLPPRTD SQCRRRWKVL LPHEVPLLQA ARKTQKVAII  660
GNFVDRESER PALGPHDFVP LPMITSAFEP EKQNQSRKRK RKSREGEVSG KKKNAAPGNT  720
SKRLQSKRPN EGMQISSVED PGITNGTEVA TFGESGMVVT KSSSSEKNPH MKTYQDIADA  780
QDGDPKKKKK LPKLPLKRNV LVEIAGNSQS CLLSHPESLE LGISNVDGLQ TFGGESETSS  840
EKRKVQEQHS EANTCTNTGE EEGSEPITDV IELDHDHCDS NVLAVNIVDQ DETVGQPDAS  900
NKEVTNLSLE GKAFMELADS NCLTLPPENL EARVTNAGGV EKSSLDGISL IKASKAPNCT  960
SKSSTELSGQ CNFVVSNPCH HDGHRKSKLS KSSNKQVLED NGKLASFCQK ISKKRRLRVD  1020
KNDKQILETN DEDDVTLASF CRSISKKRRV RVVKNADQTC PPSDLVSKRV YQHDYPNKMP  1080
SFMLDGEAQT CYSGGFAENV LLEEPSVVDT AKTDAPQEPM RKPISIDHDS DLEMSDITLA  1140
SLLHNKQKRK GQVLAKSRDQ PHSLSRMKKR STPLAKGVVQ CCNGRMLETS SGCEIQSCGT  1200
SSIPTITGDD KEPDGQDVAD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	697	702	RKRKRK
2	697	713	RKRKRKSREGEVSGKKK
3	698	714	RKRKRKSREGEVSGKKK
4	785	791	PKKKKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein