PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021650890.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

MIKC_MADS

Protein Properties

Length: 343aa MW: 38403.1 Da PI: 4.5523

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021650890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.6	5.8e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+EL +LCd+++a+i+fs++g+l +s XP_021650890.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELAILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	16	5.1e-07	107	178	6	77
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 + +++ ++ e+lqqe+ +L+ +++ + ++R + e L+ sl eL++ e++L + + ++K+ ll ++ XP_021650890.1 107 NPEVTRSNLEELQQEVCNLQHQVQIAEDQLRIYEPEPLKFTSLGELESCEKNLLDVMALLQDRKKYLLSNHA 178 4458999**********************************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGRVKLPIKR IENNTNRQVT FSKRRNGLIK KAYELAILCD IDIALIMFSP SGRLSHFSGK 60 RRIEDVIARY LNFPENDGGC DVQNREYLLS TLKKLKTEND MVLQAANPEV TRSNLEELQQ 120 EVCNLQHQVQ IAEDQLRIYE PEPLKFTSLG ELESCEKNLL DVMALLQDRK KYLLSNHASA 180 YDPTALQIYL DSEEGLPNFQ NEITSWLPPD NGQNPNSIAL KSDQSSCIPV SNNQSSTTMF 240 DGLSSHGTNV NVDPCNMGVG AGTLINNSNS ESITSWQQAF SSLSSTELLT TFMPPNSFPL 300 MKQHEIECPS FTSMLEQQQA ETTPNCTQMP SSGEGSNYES YDL

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGRVKLPIKR IENNTNRQVT FSKRRNGLIK KAYELAILCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVIARY LNFPENDGGC DVQNREYLLS TLKKLKTEND MVLQAANPEV TRSNLEELQQ  120
EVCNLQHQVQ IAEDQLRIYE PEPLKFTSLG ELESCEKNLL DVMALLQDRK KYLLSNHASA  180
YDPTALQIYL DSEEGLPNFQ NEITSWLPPD NGQNPNSIAL KSDQSSCIPV SNNQSSTTMF  240
DGLSSHGTNV NVDPCNMGVG AGTLINNSNS ESITSWQQAF SSLSSTELLT TFMPPNSFPL  300
MKQHEIECPS FTSMLEQQQA ETTPNCTQMP SSGEGSNYES YDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	4e-74	MIKC_MADS family protein