PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021652317.1
Organism
Hevea brasiliensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27170.1 Da    PI: 9.8365
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021652317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF572.4e-181156348
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ + l e
  XP_021652317.1 11 ITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDSLPE 56
                    89*************************************9988865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MTRKKVKLAY ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDSLPEVWPS  60
PLGVQRVLAQ FKNMPEMDQS KKMVNQDSFL RQRIAKANEQ LKKQRKDNRE KEMTQIMFQG  120
LIGKSLNSLN MMDLNDLGWL IDQNLRDIHK RIETLNKQAN SQAGVGAASS SGAGPSGEVN  180
IATEQAERQT FGIDMDAVHR QQWLMDWINP HEPMAFGGDE VNLHFGENNH NALWSSAFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-63M-type_MADS family protein