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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_021654289.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 221aa MW: 25258.7 Da PI: 10.1874 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 39.8 | 9.8e-13 | 115 | 203 | 11 | 99 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99
e+ +d ++P+arik+i+k+++ +++ ++ l+ ka e fi ++ ++ + +++ l +++av++ fdfl d vp++
XP_021654289.1 115 EDGEDGTMCRFPMARIKRIIKSEDSGLQLTQDVVFLVNKATEKFIEQFCEEAYGCSVRDRKNYLAYKHLSSAVSKQRRFDFLSDFVPEK 203
5566667789****************************************************************************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 221 aa Download sequence |
MASTKKSEHE EEKKKKKNKE AAVTSKSPIK KTPEKSPRQE KEKKKKKKHN KTANGTISEP 60 VEVLMIPSSS CDSQESQDET GKENAKRVEP KNQSSKSPKP KKSNKRKEKA EADYEDGEDG 120 TMCRFPMARI KRIIKSEDSG LQLTQDVVFL VNKATEKFIE QFCEEAYGCS VRDRKNYLAY 180 KHLSSAVSKQ RRFDFLSDFV PEKLKAEDAL AQRKLVENRQ G |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 13 | 35 | KKKKKNKEAAVTSKSPIKKTPEK |
| 2 | 13 | 43 | KKKKKNKEAAVTSKSPIKKTPEKSPRQEKEK |
| 3 | 13 | 51 | KKKKKNKEAAVTSKSPIKKTPEKSPRQEKEKKKKKKHNK |
| 4 | 14 | 36 | KKKKKNKEAAVTSKSPIKKTPEK |
| 5 | 14 | 44 | KKKKKNKEAAVTSKSPIKKTPEKSPRQEKEK |
| 6 | 14 | 52 | KKKKKNKEAAVTSKSPIKKTPEKSPRQEKEKKKKKKHNK |
| 7 | 100 | 106 | PKKSNKR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G07980.1 | 4e-36 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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