PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021654810.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 449aa MW: 48659.9 Da PI: 7.6066

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021654810.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.9	2.5e-11	55	81	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H+p XP_021654810.1 55 PGEPDCVYYLRTGLCGYGSNCRFNHPP 81 5789*********************97 PP
2	zf-CCCH	36.4	8.5e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_021654810.1 98 QPDCGYYLKTGTCKYGSTCKYHHPR 122 789********************96 PP
3	zf-CCCH	36.5	8.1e-12	144	167	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_021654810.1 144 KSCPYYLRTGSCKFGVACKFHHPQ 167 66********************97 PP
4	zf-CCCH	37.5	3.9e-12	286	311	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ Ck++H++ XP_021654810.1 286 DQPECRYFMNNGTCKYGSDCKYHHPK 311 689*********************96 PP
5	zf-CCCH	35.3	1.9e-11	331	357	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++ +G+Ck+G++C+F H++ XP_021654810.1 331 PGQPICSNYSMYGICKFGPTCRFDHPF 357 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MPDNSNNNNS NRQVKSNAVP NQSPDNIEDA IWRLKIHDNQ EQGGMAPSST YPDRPGEPDC 60 VYYLRTGLCG YGSNCRFNHP PAAQGTQFRE ELPERAGQPD CGYYLKTGTC KYGSTCKYHH 120 PRDRNGAGPV SFNILGLPMR QDEKSCPYYL RTGSCKFGVA CKFHHPQPAP LGAGLPLTEP 180 AGSGPMGSST APSSGLPYVG GLPTWSLVRA PYVSGPRLQG PQAYMPVVLS PTQGVFPAQG 240 WNTYVGNLSP LSSASVLGSN LVYNSRNQGD SGSRSTTNTN LPERPDQPEC RYFMNNGTCK 300 YGSDCKYHHP KERIAQIATN PVGPAGLPSR PGQPICSNYS MYGICKFGPT CRFDHPFPGY 360 PYSYSLSLQP VSIFDSSLLT YPRMSPPALS SESPVSLSSK FPDWVQNPDG ASNKHPNSDT 420 NIKISDDQPE QAGSPPPHSS QDSSEPSHD

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MPDNSNNNNS NRQVKSNAVP NQSPDNIEDA IWRLKIHDNQ EQGGMAPSST YPDRPGEPDC  60
VYYLRTGLCG YGSNCRFNHP PAAQGTQFRE ELPERAGQPD CGYYLKTGTC KYGSTCKYHH  120
PRDRNGAGPV SFNILGLPMR QDEKSCPYYL RTGSCKFGVA CKFHHPQPAP LGAGLPLTEP  180
AGSGPMGSST APSSGLPYVG GLPTWSLVRA PYVSGPRLQG PQAYMPVVLS PTQGVFPAQG  240
WNTYVGNLSP LSSASVLGSN LVYNSRNQGD SGSRSTTNTN LPERPDQPEC RYFMNNGTCK  300
YGSDCKYHHP KERIAQIATN PVGPAGLPSR PGQPICSNYS MYGICKFGPT CRFDHPFPGY  360
PYSYSLSLQP VSIFDSSLLT YPRMSPPALS SESPVSLSSK FPDWVQNPDG ASNKHPNSDT  420
NIKISDDQPE QAGSPPPHSS QDSSEPSHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-118	C3H family protein