PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021654811.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 441aa MW: 47896.3 Da PI: 7.2315

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021654811.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35	2.5e-11	47	73	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H+p XP_021654811.1 47 PGEPDCVYYLRTGLCGYGSNCRFNHPP 73 5789*********************97 PP
2	zf-CCCH	36.5	8.3e-12	90	114	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_021654811.1 90 QPDCGYYLKTGTCKYGSTCKYHHPR 114 789********************96 PP
3	zf-CCCH	36.5	7.9e-12	136	159	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_021654811.1 136 KSCPYYLRTGSCKFGVACKFHHPQ 159 66********************97 PP
4	zf-CCCH	37.5	3.8e-12	278	303	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ Ck++H++ XP_021654811.1 278 DQPECRYFMNNGTCKYGSDCKYHHPK 303 689*********************96 PP
5	zf-CCCH	35.4	1.8e-11	323	349	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++ +G+Ck+G++C+F H++ XP_021654811.1 323 PGQPICSNYSMYGICKFGPTCRFDHPF 349 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MWVYGFESFY AVPFNDCGDS DAIWRLKIHD NQEQGGMAPS STYPDRPGEP DCVYYLRTGL 60 CGYGSNCRFN HPPAAQGTQF REELPERAGQ PDCGYYLKTG TCKYGSTCKY HHPRDRNGAG 120 PVSFNILGLP MRQDEKSCPY YLRTGSCKFG VACKFHHPQP APLGAGLPLT EPAGSGPMGS 180 STAPSSGLPY VGGLPTWSLV RAPYVSGPRL QGPQAYMPVV LSPTQGVFPA QGWNTYVGNL 240 SPLSSASVLG SNLVYNSRNQ GDSGSRSTTN TNLPERPDQP ECRYFMNNGT CKYGSDCKYH 300 HPKERIAQIA TNPVGPAGLP SRPGQPICSN YSMYGICKFG PTCRFDHPFP GYPYSYSLSL 360 QPVSIFDSSL LTYPRMSPPA LSSESPVSLS SKFPDWVQNP DGASNKHPNS DTNIKISDDQ 420 PEQAGSPPPH SSQDSSEPSH D

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MWVYGFESFY AVPFNDCGDS DAIWRLKIHD NQEQGGMAPS STYPDRPGEP DCVYYLRTGL  60
CGYGSNCRFN HPPAAQGTQF REELPERAGQ PDCGYYLKTG TCKYGSTCKY HHPRDRNGAG  120
PVSFNILGLP MRQDEKSCPY YLRTGSCKFG VACKFHHPQP APLGAGLPLT EPAGSGPMGS  180
STAPSSGLPY VGGLPTWSLV RAPYVSGPRL QGPQAYMPVV LSPTQGVFPA QGWNTYVGNL  240
SPLSSASVLG SNLVYNSRNQ GDSGSRSTTN TNLPERPDQP ECRYFMNNGT CKYGSDCKYH  300
HPKERIAQIA TNPVGPAGLP SRPGQPICSN YSMYGICKFG PTCRFDHPFP GYPYSYSLSL  360
QPVSIFDSSL LTYPRMSPPA LSSESPVSLS SKFPDWVQNP DGASNKHPNS DTNIKISDDQ  420
PEQAGSPPPH SSQDSSEPSH D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-113	C3H family protein