PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021654904.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

HD-ZIP

Protein Properties

Length: 764aa MW: 84623.6 Da PI: 5.834

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021654904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.2e-21	112	167	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k XP_021654904.1 112 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 167 7999************************************************9877 PP
2	START	229.4	1e-71	280	503	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 + ++a++el k+a+aeep+W +s+ e++n+de++++f +++ +s+ea+r++gvv+ +l++lv++++d++ qW+e+++ ka+t+ XP_021654904.1 280 IVNQAMEELTKMATAEEPLWIRSVetgrEILNYDEYMKEFGVENTssgrpkRSIEASRETGVVFVDLPRLVRSFIDVN-QWKEMFPclisKAATV 373 56789*********************************7777699***************************.************ PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +vis+g ga+qlm+ae q+l+p+vp R+ +fvRy++ql+a++w++vdvS+d +++ ++s+v+++++pSg++ie+ksngh+kvtwveh XP_021654904.1 374 DVISNGegpmrnGAVQLMFAEVQMLTPMVPtREIYFVRYCKQLSAEKWAVVDVSIDKAEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVTWVEHL 467 ********************************************************98.9*************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++++h ++r +v+sgla+ga++wvatlq qce+ XP_021654904.1 468 ECQKSTVHTMYRTIVNSGLAFGARHWVATLQLQCER 503 ********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MGVVDMSNPP TSHTKDFFAS PALSLSLAGI FRSANAAEAA EAPAMEVEEG EEGSGGGEGE 60 RGRSEGTIEI SSENSGLMRS RSDDEFEGEG EHDDGDGDGD DDVGDDKKKK KRKKYHRHTA 120 EQIREMEALF KESPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKT 180 EMEKLREENK AMRETINKAC CPNCGMATTT RETSLTTEEQ HLRIENAKLK AEVEKLRAAL 240 GKHPPGAAPS CSAGNEPENR SSLDFYTGIF GLEKSRIMEI VNQAMEELTK MATAEEPLWI 300 RSVETGREIL NYDEYMKEFG VENTSSGRPK RSIEASRETG VVFVDLPRLV RSFIDVNQWK 360 EMFPCLISKA ATVDVISNGE GPMRNGAVQL MFAEVQMLTP MVPTREIYFV RYCKQLSAEK 420 WAVVDVSIDK AEDNIDASLV KCRKRPSGCI IEDKSNGHCK VTWVEHLECQ KSTVHTMYRT 480 IVNSGLAFGA RHWVATLQLQ CERIVFFMAT NVPTKDSTGV ATLAGRKSIL KLAQRMTRSF 540 CRAIGASSFH TWNKVTSKTG DDIRLSSRKN LNDPSEPTGV ILCAVSSAWL PVSPHVLFDF 600 LRDDDHRNEW DIMSNGGPVQ SIANLAKGQD RGNAVTIQAM KSKGNPMWVL QDCCTNAYES 660 MVVYASVDIN GMQSVITGCD SSNIAVLPSG FSILPDGLES RPLVITSRQE EKGTEGGSLL 720 TMAFQILTNT SPTAKLSTES VESVNTLISC TLRNIKTSLQ CEDS

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MGVVDMSNPP TSHTKDFFAS PALSLSLAGI FRSANAAEAA EAPAMEVEEG EEGSGGGEGE  60
RGRSEGTIEI SSENSGLMRS RSDDEFEGEG EHDDGDGDGD DDVGDDKKKK KRKKYHRHTA  120
EQIREMEALF KESPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKT  180
EMEKLREENK AMRETINKAC CPNCGMATTT RETSLTTEEQ HLRIENAKLK AEVEKLRAAL  240
GKHPPGAAPS CSAGNEPENR SSLDFYTGIF GLEKSRIMEI VNQAMEELTK MATAEEPLWI  300
RSVETGREIL NYDEYMKEFG VENTSSGRPK RSIEASRETG VVFVDLPRLV RSFIDVNQWK  360
EMFPCLISKA ATVDVISNGE GPMRNGAVQL MFAEVQMLTP MVPTREIYFV RYCKQLSAEK  420
WAVVDVSIDK AEDNIDASLV KCRKRPSGCI IEDKSNGHCK VTWVEHLECQ KSTVHTMYRT  480
IVNSGLAFGA RHWVATLQLQ CERIVFFMAT NVPTKDSTGV ATLAGRKSIL KLAQRMTRSF  540
CRAIGASSFH TWNKVTSKTG DDIRLSSRKN LNDPSEPTGV ILCAVSSAWL PVSPHVLFDF  600
LRDDDHRNEW DIMSNGGPVQ SIANLAKGQD RGNAVTIQAM KSKGNPMWVL QDCCTNAYES  660
MVVYASVDIN GMQSVITGCD SSNIAVLPSG FSILPDGLES RPLVITSRQE EKGTEGGSLL  720
TMAFQILTNT SPTAKLSTES VESVNTLISC TLRNIKTSLQ CEDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	113	KKKKKRK
2	108	114	KKKKKRK
3	108	113	KKKKRK
4	110	114	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein