PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021655192.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

LBD

Protein Properties

Length: 243aa MW: 26372.2 Da PI: 6.2278

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021655192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43	1.3e-13	77	126	1	50
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 +CaaCk+++r+C+++C +a y+p ++++kf +v + Ga+n+ ++l++ + XP_021655192.1 77 PCAACKIHGRQCTDKCYVASYLPPTDSHKFTVVDGMVGAANIFSFLQNNN 126 7*********************************************9865 PP
2	trihelix	37.6	5.6e-12	198	234	1	37
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskk 37 rW++qe+laL+++r++m+ ++r+++ k+plWeevs++ XP_021655192.1 198 RWPRQETLALLKIRSDMDMAFRDASVKGPLWEEVSSF 234 8**********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MGNNNHDFSP FLFPSTTPFV PFSGSSSFSS SYSVSPYSPS SPSLNSPSES YPSLPPHPAQ 60 SSSSSFNPSA DAGNLGPCAA CKIHGRQCTD KCYVASYLPP TDSHKFTVVD GMVGAANIFS 120 FLQNNNSSSY VPLLLLLRDA TTQDGELQAD INRHKHTSTQ QDPKILSAAS NGDPFFYDDG 180 DGITALKPLV RVSEGGNRWP RQETLALLKI RSDMDMAFRD ASVKGPLWEE VSSFNFCNRR 240 NLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-18	Trihelix family protein