PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021657774.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

LSD

Protein Properties

Length: 127aa MW: 14199.4 Da PI: 7.8524

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021657774.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.1	1.5e-13	38	62	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA++V+C++C+ V XP_021657774.1 38 CGSCRSLLSYPRGARHVQCSCCQMV 62 ***********************98 PP
2	zf-LSD1	38.3	2.1e-12	76	100	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C +lL+YP GA+sVRC++C++V XP_021657774.1 76 CGRCAVLLMYPCGASSVRCSSCHFV 100 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence
MDGYYRNCIH NFTSSTAMLE KSYVVYLFVD AEMAQMVCGS CRSLLSYPRG ARHVQCSCCQ 60 MVNFVLEAHE VGQVNCGRCA VLLMYPCGAS SVRCSSCHFV TEIGVHNRRP PWSVIQGYPP 120 PPPNPVW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-39	LSD family protein