PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021660911.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 542aa MW: 56011.1 Da PI: 8.7986

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021660911.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_021660911.1 67 FVCEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP
2	zf-C2H2	11.1	0.0013	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_021660911.1 143 WKCDKCSKKYAVQSDWKAHSKIC 165 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MSTTMPVDLD NSSTASGEAS VSSSGNQPPP SKSTATGKKK RNLPGMPDPD AEVIALSPKT 60 LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KEVKKRVYVC PEPTCVHHDP 120 SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR 180 RDSFITHRAF CDALAEESAR TQTRTPTPAS NLAAANPNPE GKPNLQVDPP PKPPPPPPPA 240 VPAAAAPASA LPALSQSAGV MSSSVSPTHS SELPDNPTPI IGEAQAPAPA PAPAPAPAPA 300 PAPASLNGSC SSSTSSCSNG SSSSSVFASL FVSSTASGSL QPPQTPAFTD LIRAMGHPDR 360 PADLGPSSST EPISLCLSTN HGSSIFGTAG QELRQYAPPP QPAMSATALL QKAAQMGAAA 420 TNASLLRGLG IVSSSSSAQQ DNMLWGHRQV EPENTSVTAG LGLGLHCDGG SGLKELMMGT 480 PSVFGPKQTT LDFLGLGMAA GGSPGSGLSA LITSIGSGLD VAAAAASFGG GEFTGKDMRR 540 SS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MSTTMPVDLD NSSTASGEAS VSSSGNQPPP SKSTATGKKK RNLPGMPDPD AEVIALSPKT  60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KEVKKRVYVC PEPTCVHHDP  120
SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR  180
RDSFITHRAF CDALAEESAR TQTRTPTPAS NLAAANPNPE GKPNLQVDPP PKPPPPPPPA  240
VPAAAAPASA LPALSQSAGV MSSSVSPTHS SELPDNPTPI IGEAQAPAPA PAPAPAPAPA  300
PAPASLNGSC SSSTSSCSNG SSSSSVFASL FVSSTASGSL QPPQTPAFTD LIRAMGHPDR  360
PADLGPSSST EPISLCLSTN HGSSIFGTAG QELRQYAPPP QPAMSATALL QKAAQMGAAA  420
TNASLLRGLG IVSSSSSAQQ DNMLWGHRQV EPENTSVTAG LGLGLHCDGG SGLKELMMGT  480
PSVFGPKQTT LDFLGLGMAA GGSPGSGLSA LITSIGSGLD VAAAAASFGG GEFTGKDMRR  540
SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	C2H2 family protein