PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021665460.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

CO-like

Protein Properties

Length: 414aa MW: 44979.3 Da PI: 4.8129

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021665460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.2	5.4e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ XP_021665460.1 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 7*****************************65667777765 PP
2	zf-B_box	18.7	3.6e-06	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 +C++++ +++ + C + + lC++C H g H++++ XP_021665460.1 46 LVCERCSAQPALIRCAEERISLCQNCDWMVH-GtsssitnHKRQT 89 68************************99999.5477788887765 PP
3	CCT	61.4	2.9e-21	357	400	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktR FeK++rY+sRKa+A+ R RvKGrFvk+ XP_021665460.1 357 RSNAVMRYKEKKKTRMFEKRVRYASRKARADVRRRVKGRFVKAG 400 899**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CSAQPALIRC 60 AEERISLCQN CDWMVHGTSS SITNHKRQTI NCYTGCPSAS ELSSLWSFIL DFPSVGEATC 120 EQELGLMSII ENSSSRAWGP ENTTNQNASG TVTVDEADIA KSGVYGGTSS VPELISMPNN 180 PEQPVGSVNA PLLKLCCPGT KGPALCEDDD LYKDFNMDEV DLNLENYEEL FGVTLNNSEE 240 LFENGGIESL FGSKDMSAAD SNCQGAVAAE GSSVGLVNAM QPACSNAASA DSMMSTKTEP 300 ILCFTTRQGH SSLSFSGLTG ESSVGDYQDC GASSMLFMGE PPWCPPCPES SCPSSNRSNA 360 VMRYKEKKKT RMFEKRVRYA SRKARADVRR RVKGRFVKAG DAYDYDPLNQ TRSF

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CSAQPALIRC  60
AEERISLCQN CDWMVHGTSS SITNHKRQTI NCYTGCPSAS ELSSLWSFIL DFPSVGEATC  120
EQELGLMSII ENSSSRAWGP ENTTNQNASG TVTVDEADIA KSGVYGGTSS VPELISMPNN  180
PEQPVGSVNA PLLKLCCPGT KGPALCEDDD LYKDFNMDEV DLNLENYEEL FGVTLNNSEE  240
LFENGGIESL FGSKDMSAAD SNCQGAVAAE GSSVGLVNAM QPACSNAASA DSMMSTKTEP  300
ILCFTTRQGH SSLSFSGLTG ESSVGDYQDC GASSMLFMGE PPWCPPCPES SCPSSNRSNA  360
VMRYKEKKKT RMFEKRVRYA SRKARADVRR RVKGRFVKAG DAYDYDPLNQ TRSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-135	CO-like family protein