PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021670382.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

LSD

Protein Properties

Length: 123aa MW: 12948.2 Da PI: 7.9187

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021670382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.6	9.5e-14	6	30	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V XP_021670382.1 6 CSGCRNLLLYPVGATSVCCAVCNAV 30 ************************9 PP
2	zf-LSD1	46.9	4.5e-15	45	69	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ XP_021670382.1 45 CGGCHTLLMYIRGATSVQCSCCHTI 69 ***********************97 PP
3	zf-LSD1	42.2	1.3e-13	83	107	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_021670382.1 83 CGNCRMLLMYQYGARSVKCAVCNFV 107 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence
MSQLVCSGCR NLLLYPVGAT SVCCAVCNAV TAVPPPGTEM AQLVCGGCHT LLMYIRGATS 60 VQCSCCHTIN LALEANQVAH VNCGNCRMLL MYQYGARSVK CAVCNFVTSV GASTSTTEQK 120 FNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-68	LSD family protein