PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021670483.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

HB-PHD

Protein Properties

Length: 980aa MW: 107626 Da PI: 5.0172

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021670483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.6	8.9e-13	823	864	11	52
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ L + F++n+yp+++++e LAk+lg+t rqV+ WF N R XP_021670483.1 823 VTQGLYKSFRENQYPNRTTKESLAKELGITFRQVTKWFENAR 864 67889***********************************99 PP
2	PHD	39.4	1.3e-13	461	516	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ +++++++lCd +C++ fH+ Cl ++l +e++p + wlC+ C++k XP_021670483.1 461 FCAKCGAedLTADNDIILCDgTCDRGFHQFCLAPPLLKEDIPPDgeGWLCPGCDCK 516 69999977778*****56***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence
MFKSELMGVS PSQINCHTKS YSCPKHSRPG ETPEYDVKCK CTEISEQRHW ITSETVQIEP 60 GDTITVVSQC GTSEALQQSS EDATKNTLAE NLDPPSEDAR KSGLTDKSLG PKLTAIDQKL 120 EFGSEDTRGG PSKEQYSLSS GIIQDQNALS AFTIDETLQQ LCADAAKNSL AKDLELPCEE 180 ASKSSQIGKS PCPKQSTSER TLEFSSDIAC CEPSLEKRKA CCDIVKGELV EISTTLSSCT 240 ATGHLEPSPV LVTYLGLAPD SEINIPDEKL RPPHDEVDKH SNLERSETPS KDAVSNSSQV 300 GRRVKTTAKS SRKKYILRSL VRSDRVLRSR SQEKSKSPDS SANLANVSSK IEKTTTNKKK 360 RQGKIIEADE YSKIRKHLRY LLNRMSYEQS LITAYSAEGW KGLSLEKLKP EKELQRATSE 420 IFRRKLNIRD LFQRIDSLCA EGKLPESLFD SEGQISSEDI FCAKCGAEDL TADNDIILCD 480 GTCDRGFHQF CLAPPLLKED IPPDGEGWLC PGCDCKVDCI ELLNDSQGTN ISISDSWEKV 540 FPEAAAAGQN PDQNFGLPSD DSDDNDYDPN RPEIGEKSPG NESSSDESCF TSASDELEAP 600 PGDKQHLGLP SDDSEDDDYN PDGPDLDENL VESSNSDFTS DSEGLAATLD DKELSGEDES 660 RVYIRPQGDI TREGSNHGGK QKQSLQSELL SILEPSPSQD GSVPISGKRN VERLDYKKLY 720 NETYGSISSD SSDDEDFTDT VGPRKRRKST EVAPATVNGD ASVTKTGKQD LKETEYTPKR 780 SCQQPNFENT SISPAKAHDG SSPSSSCGKT VGPSIYRRLG EAVTQGLYKS FRENQYPNRT 840 TKESLAKELG ITFRQVTKWF ENARWSFNHS SSMDVLVRKT SKMESPLPKT LGPKTISRDA 900 TCNGAQREES PKMQSAKLGS PEASKQKSKT SKSRKRKHTS DQTSSGTDSI TEKMVKLSAN 960 LPKVQEKQVG GRMTRSKSVA

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence

MFKSELMGVS PSQINCHTKS YSCPKHSRPG ETPEYDVKCK CTEISEQRHW ITSETVQIEP  60
GDTITVVSQC GTSEALQQSS EDATKNTLAE NLDPPSEDAR KSGLTDKSLG PKLTAIDQKL  120
EFGSEDTRGG PSKEQYSLSS GIIQDQNALS AFTIDETLQQ LCADAAKNSL AKDLELPCEE  180
ASKSSQIGKS PCPKQSTSER TLEFSSDIAC CEPSLEKRKA CCDIVKGELV EISTTLSSCT  240
ATGHLEPSPV LVTYLGLAPD SEINIPDEKL RPPHDEVDKH SNLERSETPS KDAVSNSSQV  300
GRRVKTTAKS SRKKYILRSL VRSDRVLRSR SQEKSKSPDS SANLANVSSK IEKTTTNKKK  360
RQGKIIEADE YSKIRKHLRY LLNRMSYEQS LITAYSAEGW KGLSLEKLKP EKELQRATSE  420
IFRRKLNIRD LFQRIDSLCA EGKLPESLFD SEGQISSEDI FCAKCGAEDL TADNDIILCD  480
GTCDRGFHQF CLAPPLLKED IPPDGEGWLC PGCDCKVDCI ELLNDSQGTN ISISDSWEKV  540
FPEAAAAGQN PDQNFGLPSD DSDDNDYDPN RPEIGEKSPG NESSSDESCF TSASDELEAP  600
PGDKQHLGLP SDDSEDDDYN PDGPDLDENL VESSNSDFTS DSEGLAATLD DKELSGEDES  660
RVYIRPQGDI TREGSNHGGK QKQSLQSELL SILEPSPSQD GSVPISGKRN VERLDYKKLY  720
NETYGSISSD SSDDEDFTDT VGPRKRRKST EVAPATVNGD ASVTKTGKQD LKETEYTPKR  780
SCQQPNFENT SISPAKAHDG SSPSSSCGKT VGPSIYRRLG EAVTQGLYKS FRENQYPNRT  840
TKESLAKELG ITFRQVTKWF ENARWSFNHS SSMDVLVRKT SKMESPLPKT LGPKTISRDA  900
TCNGAQREES PKMQSAKLGS PEASKQKSKT SKSRKRKHTS DQTSSGTDSI TEKMVKLSAN  960
LPKVQEKQVG GRMTRSKSVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-120	HB-PHD family protein