PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021671117.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 463aa MW: 49616 Da PI: 8.6699

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021671117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.9	5.2e-11	51	75	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++rtG+C yG+rC+++H++ XP_021671117.1 51 APDCVYYMRTGFCGYGSRCRYNHPR 75 589********************96 PP
2	zf-CCCH	40.5	4.6e-13	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tGtCk+G++CkF+H++ XP_021671117.1 96 EPPCQFYLKTGTCKFGASCKFHHPK 120 79*********************96 PP
3	zf-CCCH	34.6	3.1e-11	141	165	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++++tG+Ck+G +CkF+H+ XP_021671117.1 141 GEKECSYYLKTGQCKFGLTCKFHHP 165 7899********************8 PP
4	zf-CCCH	36.5	8e-12	295	321	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ XP_021671117.1 295 PGEPECQYYLRTGDCKFGSSCRYHHPR 321 5799*********************96 PP
5	zf-CCCH	36.3	9.6e-12	342	367	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++r+G Ck+G++CkF H++ XP_021671117.1 342 GVQPCTFYLRNGNCKFGATCKFDHPM 367 6789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MELYGRNQAM NGSQSGQQLE WSPAGGETGL EESMWRLGLA SSESYPERPG APDCVYYMRT 60 GFCGYGSRCR YNHPRSRAGV EAAVRATGEY PERVGEPPCQ FYLKTGTCKF GASCKFHHPK 120 HGGGSLSHVP LNTHGYPLRP GEKECSYYLK TGQCKFGLTC KFHHPHPAGT SMPESAPQFY 180 QPVQSPSITI PDQYGGASTS LRVRPPILPG SYVQGAYGPV LFPPGVVPFP GWSPYSAPVS 240 PVPSPGAQPA VGATSLYGIT QLSSSAPAAG PYPSPSSAAG LSIGIQKEQP FPERPGEPEC 300 QYYLRTGDCK FGSSCRYHHP RDRVMPRTNC VLSPLGLPLR PGVQPCTFYL RNGNCKFGAT 360 CKFDHPMGSM RYSPSASSLI DMPVAPYPVG SLLATLAPSS SSSELLPELI GVTKKDPYLS 420 RIPSSGNTSS SSVGLIFSQT GSVSLSELQH SSTRQVGEVR RSS

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MELYGRNQAM NGSQSGQQLE WSPAGGETGL EESMWRLGLA SSESYPERPG APDCVYYMRT  60
GFCGYGSRCR YNHPRSRAGV EAAVRATGEY PERVGEPPCQ FYLKTGTCKF GASCKFHHPK  120
HGGGSLSHVP LNTHGYPLRP GEKECSYYLK TGQCKFGLTC KFHHPHPAGT SMPESAPQFY  180
QPVQSPSITI PDQYGGASTS LRVRPPILPG SYVQGAYGPV LFPPGVVPFP GWSPYSAPVS  240
PVPSPGAQPA VGATSLYGIT QLSSSAPAAG PYPSPSSAAG LSIGIQKEQP FPERPGEPEC  300
QYYLRTGDCK FGSSCRYHHP RDRVMPRTNC VLSPLGLPLR PGVQPCTFYL RNGNCKFGAT  360
CKFDHPMGSM RYSPSASSLI DMPVAPYPVG SLLATLAPSS SSSELLPELI GVTKKDPYLS  420
RIPSSGNTSS SSVGLIFSQT GSVSLSELQH SSTRQVGEVR RSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein