PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021672615.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

Trihelix

Protein Properties

Length: 624aa MW: 71873.8 Da PI: 6.5771

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021672615.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	101.5	6.7e-32	433	517	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev aLi++r+++e+++++ lk+plWeevs+ m++ g++rs+k+Ckekwen+nk+++k ke+ kkr s++s+tc+yfdql+ XP_021672615.1 433 RWPEAEVEALIQVRSSVETKFQEPGLKGPLWEEVSSLMASMGYQRSAKRCKEKWENINKYFRKAKESTKKR-SQQSKTCSYFDQLD 517 8*******************************************************************8.78889******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
MQPSYGVPDI HRQQQNHHHL QQFIENDDCC SSVLPISNPS QNLNHPYQPH LPQQKQPEYI 60 FLQQQQNSIP ILHQLFEHQH QPQQQDFRQF QSQEERLYSQ IRHQHQQVQA QPPHPPFFSV 120 KFKLGLDQNG GNKECALNQR EATDFLNGNE HNPPHVPPVM PHCWHPQEDS TSIKEPFWKP 180 LSRSKNKQQD ENGEQEVQRK KNEHCKFLDT QQIDERNERC KDLENKYRLF GELEAIYSLA 240 KVGEANQTGS GSALTGETSP TNAGLSVPFN AVHGQNVGAG NAGNGIDHGS ENSIGEEASL 300 RKSQKRIRKR KMKKKLSTMA EFFENLVKQV MDHQEILHRN FLEVIERMDK ERTKREEAWR 360 CQEAEKYNRE AVSRAHEQAL ASRREAQIVS YVEKITGQSI DLPARKTPLL LQPEIPEEPT 420 KRLTPIITDS HSRWPEAEVE ALIQVRSSVE TKFQEPGLKG PLWEEVSSLM ASMGYQRSAK 480 RCKEKWENIN KYFRKAKEST KKRSQQSKTC SYFDQLDQLY SRTFINSPFN NSSSNGIEVE 540 KQGHSELLEA FIAGKDIATS INPSSGNVII ADMGSSRLEF GGIINEKVER GSHEQEKENH 600 DDYYDEKGEE DRSIDSDEEI GNFR

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

MQPSYGVPDI HRQQQNHHHL QQFIENDDCC SSVLPISNPS QNLNHPYQPH LPQQKQPEYI  60
FLQQQQNSIP ILHQLFEHQH QPQQQDFRQF QSQEERLYSQ IRHQHQQVQA QPPHPPFFSV  120
KFKLGLDQNG GNKECALNQR EATDFLNGNE HNPPHVPPVM PHCWHPQEDS TSIKEPFWKP  180
LSRSKNKQQD ENGEQEVQRK KNEHCKFLDT QQIDERNERC KDLENKYRLF GELEAIYSLA  240
KVGEANQTGS GSALTGETSP TNAGLSVPFN AVHGQNVGAG NAGNGIDHGS ENSIGEEASL  300
RKSQKRIRKR KMKKKLSTMA EFFENLVKQV MDHQEILHRN FLEVIERMDK ERTKREEAWR  360
CQEAEKYNRE AVSRAHEQAL ASRREAQIVS YVEKITGQSI DLPARKTPLL LQPEIPEEPT  420
KRLTPIITDS HSRWPEAEVE ALIQVRSSVE TKFQEPGLKG PLWEEVSSLM ASMGYQRSAK  480
RCKEKWENIN KYFRKAKEST KKRSQQSKTC SYFDQLDQLY SRTFINSPFN NSSSNGIEVE  540
KQGHSELLEA FIAGKDIATS INPSSGNVII ADMGSSRLEF GGIINEKVER GSHEQEKENH  600
DDYYDEKGEE DRSIDSDEEI GNFR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	314	RKSQKRIRKRKMKK
2	301	316	RKSQKRIRKRKMKKKL
3	305	312	KRIRKRKM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-50	Trihelix family protein