PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021672901.1
Organism
Hevea brasiliensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27199.9 Da    PI: 9.9572
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021672901.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.4e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_021672901.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                    79***********************************************96 PP
2K-box105.47e-35761742100
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     ++++ ++++++++ s++ e+ kLk+++e Lqr+qRh++G dL++LslkeLq+Leqq++++lk+iRs+Kn+l++e+i elqkk k+lqe+n++L k
  XP_021672901.1  76 AERQLVATDTETNGSWTLEYVKLKARLEVLQRNQRHFMGRDLDTLSLKELQSLEQQIDSALKHIRSRKNQLMYESIAELQKKDKALQEQNNQLAK 170
                     66777788889999********************************************************************************* PP

           K-box  97 klee 100
                     k++e
  XP_021672901.1 171 KVKE 174
                     *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SSMERILERY ERYSYAERQL VATDTETNGS WTLEYVKLKA RLEVLQRNQR HFMGRDLDTL  120
SLKELQSLEQ QIDSALKHIR SRKNQLMYES IAELQKKDKA LQEQNNQLAK KVKEKEKEMA  180
QQTQMEQQNH GVDSSTVTAQ SLNIRGNRGE DETTPIQHRG NAILPAWMLP HLNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.16e-89MIKC_MADS family protein