PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021673048.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 503aa MW: 55873.9 Da PI: 9.0995

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021673048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.8e-11	21	47	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_021673048.1 21 PGEPDCSYYIRTGLCRFGATCRFNHPP 47 5789*********************97 PP
2	zf-CCCH	39.9	7.1e-13	81	106	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_021673048.1 81 GQPECQYYLKTGTCKFGATCKFHHPK 106 5799********************96 PP
3	zf-CCCH	36.5	7.9e-12	130	152	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+Ck+G++CkF+H++ XP_021673048.1 130 DCAYYLRTGQCKFGSTCKFHHPQ 152 7********************97 PP
4	zf-CCCH	37.7	3.5e-12	286	312	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_021673048.1 286 PGQPECQFYMKTGDCKFGAVCRFHHPR 312 5789*********************96 PP
5	zf-CCCH	38.8	1.6e-12	332	358	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ XP_021673048.1 332 PGEPLCIFYSRYGVCKFGPSCKFDHPM 358 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MWQMNLRSNE TMESGPYPER PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LVLTAACLDK 60 FLELQALAAA RMKGEFPERM GQPECQYYLK TGTCKFGATC KFHHPKDKAG IAGRVSLNIL 120 GYPLRPNEID CAYYLRTGQC KFGSTCKFHH PQPTNVMVPL RGSPIYPTVH SPTSPGQQSY 180 AGGLTNWSRA SFVTSPRWQV PSSYTPLILP QGVVSVPRWN AYCGQLGSVS SPEGRQQTGN 240 SQIYETSRQS ELVNTVSQGA LSPFRSSSVP VGFYALQREN VFPERPGQPE CQFYMKTGDC 300 KFGAVCRFHH PRERLIPAPD CVLSPIGLPL RPGEPLCIFY SRYGVCKFGP SCKFDHPMGI 360 FTYNLSASSS ADPPVRRFLG PSSGSAAFTL SPEGLVEAGS TKPRRLSLSE PRQMPSGSFL 420 PKFVGEFDFN REAFGGSRMK WNVIAYCLLG WIIQGLHISQ AMNNNIHGLP PTSTPGFCNK 480 SLKYIRYQEN IIHDFIGHSL ISI

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MWQMNLRSNE TMESGPYPER PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LVLTAACLDK  60
FLELQALAAA RMKGEFPERM GQPECQYYLK TGTCKFGATC KFHHPKDKAG IAGRVSLNIL  120
GYPLRPNEID CAYYLRTGQC KFGSTCKFHH PQPTNVMVPL RGSPIYPTVH SPTSPGQQSY  180
AGGLTNWSRA SFVTSPRWQV PSSYTPLILP QGVVSVPRWN AYCGQLGSVS SPEGRQQTGN  240
SQIYETSRQS ELVNTVSQGA LSPFRSSSVP VGFYALQREN VFPERPGQPE CQFYMKTGDC  300
KFGAVCRFHH PRERLIPAPD CVLSPIGLPL RPGEPLCIFY SRYGVCKFGP SCKFDHPMGI  360
FTYNLSASSS ADPPVRRFLG PSSGSAAFTL SPEGLVEAGS TKPRRLSLSE PRQMPSGSFL  420
PKFVGEFDFN REAFGGSRMK WNVIAYCLLG WIIQGLHISQ AMNNNIHGLP PTSTPGFCNK  480
SLKYIRYQEN IIHDFIGHSL ISI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein