PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021673050.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 432aa MW: 47783.6 Da PI: 9.2416

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021673050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.1	5.9e-13	10	35	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_021673050.1 10 GQPECQYYLKTGTCKFGATCKFHHPK 35 5799********************96 PP
2	zf-CCCH	36.8	6.6e-12	59	81	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+Ck+G++CkF+H++ XP_021673050.1 59 DCAYYLRTGQCKFGSTCKFHHPQ 81 7********************97 PP
3	zf-CCCH	37.9	2.9e-12	215	241	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_021673050.1 215 PGQPECQFYMKTGDCKFGAVCRFHHPR 241 5789*********************96 PP
4	zf-CCCH	39	1.3e-12	261	287	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ XP_021673050.1 261 PGEPLCIFYSRYGVCKFGPSCKFDHPM 287 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MKGEFPERMG QPECQYYLKT GTCKFGATCK FHHPKDKAGI AGRVSLNILG YPLRPNEIDC 60 AYYLRTGQCK FGSTCKFHHP QPTNVMVPLR GSPIYPTVHS PTSPGQQSYA GGLTNWSRAS 120 FVTSPRWQVP SSYTPLILPQ GVVSVPRWNA YCGQLGSVSS PEGRQQTGNS QIYETSRQSE 180 LVNTVSQGAL SPFRSSSVPV GFYALQRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP 240 RERLIPAPDC VLSPIGLPLR PGEPLCIFYS RYGVCKFGPS CKFDHPMGIF TYNLSASSSA 300 DPPVRRFLGP SSGSAAFTLS PEGLVEAGST KPRRLSLSEP RQMPSGSFLP KFVGEFDFNR 360 EAFGGSRMKW NVIAYCLLGW IIQGLHISQA MNNNIHGLPP TSTPGFCNKS LKYIRYQENI 420 IHDFIGHSLI SI

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MKGEFPERMG QPECQYYLKT GTCKFGATCK FHHPKDKAGI AGRVSLNILG YPLRPNEIDC  60
AYYLRTGQCK FGSTCKFHHP QPTNVMVPLR GSPIYPTVHS PTSPGQQSYA GGLTNWSRAS  120
FVTSPRWQVP SSYTPLILPQ GVVSVPRWNA YCGQLGSVSS PEGRQQTGNS QIYETSRQSE  180
LVNTVSQGAL SPFRSSSVPV GFYALQRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP  240
RERLIPAPDC VLSPIGLPLR PGEPLCIFYS RYGVCKFGPS CKFDHPMGIF TYNLSASSSA  300
DPPVRRFLGP SSGSAAFTLS PEGLVEAGST KPRRLSLSEP RQMPSGSFLP KFVGEFDFNR  360
EAFGGSRMKW NVIAYCLLGW IIQGLHISQA MNNNIHGLPP TSTPGFCNKS LKYIRYQENI  420
IHDFIGHSLI SI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-145	C3H family protein