PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021673056.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

CO-like

Protein Properties

Length: 492aa MW: 54169.2 Da PI: 7.7167

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021673056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.4	4.6e-06	12	43	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++++ + l+C+ ++ lC C ++ H+ XP_021673056.1 12 VSCDFCSDQVAVLYCRADSAKLCLFCDQHVHS 43 57**************************9995 PP
2	zf-B_box	24.4	5.9e-08	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++++++++ Ce+++ lC++C H + H+++p+ XP_021673056.1 54 SQICDNCSSEPVSVRCETDNLVLCRECDWDAHGScsvsasHDRTPI 99 689*************************999954888999988876 PP
3	CCT	63.4	7e-22	444	487	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ XP_021673056.1 444 RGTAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAS 487 6789*************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MGSPKSDTKR TVSCDFCSDQ VAVLYCRADS AKLCLFCDQH VHSANLLSRK HFRSQICDNC 60 SSEPVSVRCE TDNLVLCREC DWDAHGSCSV SASHDRTPIE GFSGCPSALE LASIWGFDLQ 120 EKKLDKESSV PLIQSWSGCG VQDMLMQIEP WVCRSSGGVS YMDSMVPNDR AMVYGNGSNV 180 EMVTMSKRKQ IPSCGKYKQV IFKQLMGLLK RNMITGDGGG GENLMPETPS RNGWHGNVEA 240 PDFVNGNDGV TAANGASSTV PQQPLQEQAP FTSFIMLPSP MDLKPSGRVV GDNIMWGGNA 300 SAQGTQIWDF NLGRLRTQEE YDQLEVSDAG FMIKNIGELM KETSLSNTKM LGDLYHLDCL 360 IAHDDMTLFN NNSNNPTASQ GPATSESNNL PIARHSSGST FGKLKSCSGG KDVQFMEQKI 420 LVRGDSVRTM PATEVDTELL AKNRGTAMQR YKEKKKTRRY DKHIRYESRK ARADTRKRVK 480 GRFVKASAAP DG

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MGSPKSDTKR TVSCDFCSDQ VAVLYCRADS AKLCLFCDQH VHSANLLSRK HFRSQICDNC  60
SSEPVSVRCE TDNLVLCREC DWDAHGSCSV SASHDRTPIE GFSGCPSALE LASIWGFDLQ  120
EKKLDKESSV PLIQSWSGCG VQDMLMQIEP WVCRSSGGVS YMDSMVPNDR AMVYGNGSNV  180
EMVTMSKRKQ IPSCGKYKQV IFKQLMGLLK RNMITGDGGG GENLMPETPS RNGWHGNVEA  240
PDFVNGNDGV TAANGASSTV PQQPLQEQAP FTSFIMLPSP MDLKPSGRVV GDNIMWGGNA  300
SAQGTQIWDF NLGRLRTQEE YDQLEVSDAG FMIKNIGELM KETSLSNTKM LGDLYHLDCL  360
IAHDDMTLFN NNSNNPTASQ GPATSESNNL PIARHSSGST FGKLKSCSGG KDVQFMEQKI  420
LVRGDSVRTM PATEVDTELL AKNRGTAMQR YKEKKKTRRY DKHIRYESRK ARADTRKRVK  480
GRFVKASAAP DG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	1e-116	CO-like family protein